Gene Sden_1338 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1338 
SymbolfliR 
ID4017624 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1557298 
End bp1558101 
Gene Length804 bp 
Protein Length267 aa 
Translation table11 
GC content43% 
IMG OID637955335 
Productflagellar biosynthesis protein FliR 
Protein accessionYP_562347 
Protein GI91792696 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAATAT TGTTTGATGA AATCAGTCAA ACGATAGCAG CCTACCTATG GCCACTATTT 
CGTATTTCCT CCATGTTAAT GATCATGGCG GTATTTGGTG CCAATACCAC TCCCTCACGA
GTTAGGCTGA TGTTAGCCGT CGCGTTTACG TTCGCTATCG CGCCTGTACT GCCTGAAATC
AAAAATGTGG AGTTGTTCGC TTTTAGCGCC GTGTTTATTA CTTTGCAGCA AATACTCATT
GGTGCAGTGA TGGGCTTTGT GACGTTAATG TTGATGCAAA CCTTTGTGTT GACAGGTCAA
ATTATCGGTA TGCAAACAAG CTTAGGTTTC GCTTCTATGG TGGATCCTGG TTCTGGTGAG
CAAACCCCTG TGGTAGGTAA CTTTTTTCTC TTATTAGCAA CACTGATTTT CTTATCAATA
GACGGGCATT TATTGATGTT TCGCATGATA GTGGCAAGTT TTGAATCTAT TCCTGTATCA
AACCAAGGGA TAGAAATAGC GAACTATAAG ATACTGGCTG AATGGGGCGG TTATATGTTT
GGCGCGGCAT TAACCATGTC TATGTCTGCC ATAGTTGCCT TGCTATTGAT TAATTTGTCT
TTTGGTGTGA TGACTCGCGC AGCGCCGCAA CTCAATATTT TTTCCATTGG TTTCCCTGTC
ACCATGGTCA GCGGTTTGCT TATTTTATGG TTGACTCTTG GACCCATTAT GGCTCACTTC
GATGAGGTGT GGTATGCGGC CCAAGTCTTA ATGTGTGATT TGCTTAGTCT AACTTGCCAA
CTGGATGAAG CCACTGTTTT CTAG
 
Protein sequence
MEILFDEISQ TIAAYLWPLF RISSMLMIMA VFGANTTPSR VRLMLAVAFT FAIAPVLPEI 
KNVELFAFSA VFITLQQILI GAVMGFVTLM LMQTFVLTGQ IIGMQTSLGF ASMVDPGSGE
QTPVVGNFFL LLATLIFLSI DGHLLMFRMI VASFESIPVS NQGIEIANYK ILAEWGGYMF
GAALTMSMSA IVALLLINLS FGVMTRAAPQ LNIFSIGFPV TMVSGLLILW LTLGPIMAHF
DEVWYAAQVL MCDLLSLTCQ LDEATVF