| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1324 |
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| Symbol | fliF |
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| ID | 4017496 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1544863 |
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| End bp | 1546563 |
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| Gene Length | 1701 bp |
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| Protein Length | 566 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637955321 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_562333 |
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| Protein GI | 91792682 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAGCACAG ATATCATTGT TGGTTCAGAT ACTGCAGATG GCTCTGGCGT AGGCCAAGAG
AACAAGTCAG GATTAATGAG CAATATTGGC GGTACTGACT TTTTGCGCCA AATAACCATG
ATCTTGGCCT TGGCTGTCTG TTTAGCATTA GCCGTTTTCG TGATGATGTG GGCCCAAGAG
CCTGAGTATC GTCCTTTGGG TAAAATGGAT ACAGCTGAAA TGATCCAAGT GCTCGATGTA
TTGGATAAAA ATCAGATCAA ATACGAAATT CAGCTCGATG TTATCAAGGT GCCAGAAGAT
CAATACCAAG ATATTAAATT AATCTTAAGC CGCGCAGGTA TTGAAAGTAA CGTCGATACC
AATGACTATT TGAGTAAAGA CAGTGGCTTT GGCGTAAGCC AAAGGATGGA GCAAGCTAGG
CTCAAGCACA GTCAAGAACT TAACCTCGCC CGAGTGATTG AAGAATTAAA GAGCGTGAGC
CGAGCTAAAG TGATTTTGGC GCTGCCTAAA GAAAACGTCT TTGCCCGCAA TCAATCTCAA
CCCAGTGCCA CAGTCGTGGT AAATGTAAGA CGCGGTTCAC TGGGTCAGGA AGAAATCGAC
GCTATTGTGG ATATCGTTGC CTCTGCCGTG CAAGGCTTAG AGCCTGAGCG AGTTACGGTC
ACGGACTCCA ATGGACGACT TCTCAACTCA GGCAGTCAAG ATGGCGCGTC GGCTCGAGCA
CGTCGTGAAC TCGAGCTAGT GCAAAATCAA GAAGCGGAAT ACCGCAAGAA AATCGAATCT
ATTTTAATGC CTATTCTTGG TCCTGAGAAC TTCACCTCAG AAGTTGATGT GACCATGGAC
TTTACTGCTA TCGAGCAAAC CGCCAAGCGT TTTGCCCCAG ATTTGCCTGC ACTTCGCAGT
GAAATGACCA TAGAAACGAA CACCAATGGT GAACGGGTAG GGGGCATTCC TGGGGCCTTG
AGCAATCAAC CGCCCATGGA GTCAGACATT CCTGAAAATG CGGGAGAAGC CACAGAAAGT
GTGGCCAGTA ATGGCAATGT GCACAGAGAA GCCACCCGTA ATTTTGAATT GGATACCACA
ATTAGCCATA CCCGTCAGCA AATTGGCGTA GTGAGAAGAG TCAGTGTGTC TGTCGCAATT
GATTTTAAAG CGGGTGCTGC CGGTGAAGAT GGTCAAGTTA CAAGAGTGGC GCGTACAGAG
CAAGAGTTAG CGAATATTCG TCGATTGCTT GAAGGTGCTG TGGGCTTTAG TGCTCAACGG
GGTGACATGC TAGAAGTCGT TACTGTGCCC TTTATGGACC AATTATTAGA GGAACTGCCA
GCGCCAGATC TGTGGGAGCA GCCATGGTTT TGGCGAGCGA TTAAGTTAGG CATTGGCGCC
ATCGTTATCT TAGTGCTTAT CTTAGCGGTA GTGAGACCTA TGTTAAGGCG TCTCATCGAC
CCTGAAGGGG TTAACATGCC AGATGATACT CGTCTGGGGC ATGAATTAGC TGAAATTGAA
GATCAATATG CAGCAGATAC TCTCGGCATG CTCAATACTA AAGAAGCTGA ATACAGTTAT
GCGGACGATG GTTCAATTCA TATTCCAAAT CTTCATAAAG ATGATGATAT GATAAAAGCC
ATCAGAGCCC TGGTTGCCAA TGAACCCGAG CTATCAACTC AAGTTGTGAA AAACTGGTTA
TTAGAAGATG CCCAAAAATA A
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| Protein sequence | MSTDIIVGSD TADGSGVGQE NKSGLMSNIG GTDFLRQITM ILALAVCLAL AVFVMMWAQE
PEYRPLGKMD TAEMIQVLDV LDKNQIKYEI QLDVIKVPED QYQDIKLILS RAGIESNVDT
NDYLSKDSGF GVSQRMEQAR LKHSQELNLA RVIEELKSVS RAKVILALPK ENVFARNQSQ
PSATVVVNVR RGSLGQEEID AIVDIVASAV QGLEPERVTV TDSNGRLLNS GSQDGASARA
RRELELVQNQ EAEYRKKIES ILMPILGPEN FTSEVDVTMD FTAIEQTAKR FAPDLPALRS
EMTIETNTNG ERVGGIPGAL SNQPPMESDI PENAGEATES VASNGNVHRE ATRNFELDTT
ISHTRQQIGV VRRVSVSVAI DFKAGAAGED GQVTRVARTE QELANIRRLL EGAVGFSAQR
GDMLEVVTVP FMDQLLEELP APDLWEQPWF WRAIKLGIGA IVILVLILAV VRPMLRRLID
PEGVNMPDDT RLGHELAEIE DQYAADTLGM LNTKEAEYSY ADDGSIHIPN LHKDDDMIKA
IRALVANEPE LSTQVVKNWL LEDAQK
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