| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1272 |
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| Symbol | |
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| ID | 4017540 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1485406 |
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| End bp | 1486890 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637955268 |
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| Product | putative transglycosylase |
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| Protein accession | YP_562281 |
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| Protein GI | 91792630 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4623] Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0000000129454 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTAAAT ACTTATATGT CATTTTATTG GGCCTCTTAT TGTCTGGCTG CCAGCCAGCA
GAGGTCGTTG AGATAGAGGC AAGCCCTAAA GCCCAAAAAC GTACCGTGCT AAAAGTCGGT
ACCTTGTATG GGCCGCAGAT CTACGTCAAC AACTCCCAAG GTGAAACAGG GTTTGACTAC
GAGATGGCCA ATCGCTTTGC CGACTACTTA GGTGTGTCGT TAGAGATGAT CCCCTTTACC
GACCGTAAAC AACTGTTCAA AGCCCTTAAA GACAATGATA TTGATATCAT TGCCGCGGGT
ATTGCCAAAA CCCCTGGCAG AGGCGAGCAA TTTAAAATGG GGCCGACCCT TTATAAGGTA
AACCAAGTCT TGGTCTACCG TGAAGGCACC CCAGAGCCTA AAGACATTGG CACCTTAAGT
GGTGAGATCA CTGTGATGTC CAATTCATCT TCGGTTAATA CTTTGACTCA GCTGCAAAAG
GACTACCCAG AGCTGCTGTG GAACCAAGTG AACGATAAAG ACAATGAAGA GCTATTCGCC
TTGATTGCCA AGGGTGAGCT TAACTACACC ATTTCTGATT CCAACAGTTT ATTGATCAAT
CAAAGATTCT TGCCTGAGCT ACGTGCTGGG ATGATTTTGG AAGAAAAAAT TGAAGTGGTC
TGGTTACTGC CGCCTAAAAA CAGCGACAAG CTCATGAGCC AATTGCTGGC ATTTTGGCAC
AATGAGCAAA GAGCAGGTAC CTTAGAGCAC TTAAATGAAA AGTATTTTGG CCATGTTAAA
CGCTTCGATT ACGTGGACAC CCGTGCCTTT ATTCGCGCCA TAGACAATGT ACTTCCGGCC
TATCGCAGTT TATTTGAAAC CTACTCAGGT GAGCTGGATT GGCGCAAGCT AGCCGCGGCC
AGCTATCAGG AGTCCCATTG GAACCCCAAC GCGCGCTCAA AAACTGGGGT CAGAGGCATG
ATGATGCTGA CCCAACCCAC CGCAAGCTAT GTGGGCGTCA GTGACAGAAC AGATGCAGAG
CAAAGCATAC GTGGCGGCGC CATCTATCTG AAAGATATGA TAGAAAGGCT TCCTGAGTCC
ATCAGTGATA GCCAACGAAT TTGGTTTGCC TTAGCGGCTT ATAATATCGG CATGGGTCAT
GTAGAAGATG CACGTCGTCT TGCGGTCTCC ATGGACATGG ATCCCGATGC ATGGCGTGAT
GTTAAAAAGG TGCTGCCACT GTTGCAGCAG AGAAAATACT ATAAACAGAC TCGCTATGGT
TACGCCAGAG GCAGCCAAGC CGTACATTAT GTGGATAGCA TACGCCGTTA TTATGACACC
TTAGTTTGGG TCGATAATCA GACTAAAAAG ATGGAAGTCA TAGAAGCACC GGTTGAAATA
TTGGCGGATA AAGTTGATGC TAATGATAAC ATTAAACAGT CACTGGCAAG CGACAGTAAA
ACCAATAACA CCCTTAAGCC TAAGTTGGGT GCAGGCCAGC CCTAG
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| Protein sequence | MIKYLYVILL GLLLSGCQPA EVVEIEASPK AQKRTVLKVG TLYGPQIYVN NSQGETGFDY
EMANRFADYL GVSLEMIPFT DRKQLFKALK DNDIDIIAAG IAKTPGRGEQ FKMGPTLYKV
NQVLVYREGT PEPKDIGTLS GEITVMSNSS SVNTLTQLQK DYPELLWNQV NDKDNEELFA
LIAKGELNYT ISDSNSLLIN QRFLPELRAG MILEEKIEVV WLLPPKNSDK LMSQLLAFWH
NEQRAGTLEH LNEKYFGHVK RFDYVDTRAF IRAIDNVLPA YRSLFETYSG ELDWRKLAAA
SYQESHWNPN ARSKTGVRGM MMLTQPTASY VGVSDRTDAE QSIRGGAIYL KDMIERLPES
ISDSQRIWFA LAAYNIGMGH VEDARRLAVS MDMDPDAWRD VKKVLPLLQQ RKYYKQTRYG
YARGSQAVHY VDSIRRYYDT LVWVDNQTKK MEVIEAPVEI LADKVDANDN IKQSLASDSK
TNNTLKPKLG AGQP
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