Gene Sden_1229 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1229 
Symbol 
ID4017278 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1432247 
End bp1432954 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content43% 
IMG OID637955225 
Productregulatory protein, TetR 
Protein accessionYP_562238 
Protein GI91792587 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones41 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTGGCACC TCTTTCTTGA ATGTGCATTC AAGATATTCT TATTTGAACA TTCATTCAAG 
TATTTTTTGA ATAATTTTTC AAAGCTGGGT AGACTCATCA TACCAAGCCT TAAGAAAACG
CAAATTATGA GAAATGCCGA GTTCGACCGC AAAGCCGTAT TGTGTGCCGC CATGAGTGTG
TTCACCGCCA AAGGCTATGC GAAAACCAGC ATGCAAGATC TCACCAAAGC CACAGGACTG
CACCCGGGCT CCATCTATTG TGCATTTGAA AATAAGAAAG GCTTATTGAT TGCGGCCATA
GGTCAGTATC AGGATGAACG TCATCAGCAG TTTGTCCGCC TATTTGACAA TGACGCCCCA
TGTTTAAGTA ATTTAAGCAA TTACTTAACT GAAATCGTCG ATGAGTGTTT ATCTCAAGAT
ATGAGCAAGG CCTGTCTGCT GACAAAAACC TTGAATGAAG TGGGTTCGCA AGATGAAGAG
ATTAAAACGC TGATCACCGC AAATTTAACC GCTTGGCAAG CAGCGCTCAC GGCAGTGTTT
AGCTTAGCCC AAAAAAATAA CGAAATTGAC AGCCAAGCCA ATAGCCAAGA ATTAGCGCAA
TATTTGATGA TGGGTATTTA TGGGCTGAGA ACCTTTGCTC ACACTCACAA GGATGGCCAA
CAACTAGCTC AACTGGCAAA GAAACTGTTA GCCGATGTCA GTCGCTAA
 
Protein sequence
MWHLFLECAF KIFLFEHSFK YFLNNFSKLG RLIIPSLKKT QIMRNAEFDR KAVLCAAMSV 
FTAKGYAKTS MQDLTKATGL HPGSIYCAFE NKKGLLIAAI GQYQDERHQQ FVRLFDNDAP
CLSNLSNYLT EIVDECLSQD MSKACLLTKT LNEVGSQDEE IKTLITANLT AWQAALTAVF
SLAQKNNEID SQANSQELAQ YLMMGIYGLR TFAHTHKDGQ QLAQLAKKLL ADVSR