Gene Sden_1214 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1214 
Symbol 
ID4017737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1414612 
End bp1414809 
Gene Length198 bp 
Protein Length65 aa 
Translation table11 
GC content42% 
IMG OID637955204 
Productcarbon storage regulator 
Protein accessionYP_562223 
Protein GI91792572 
COG category[T] Signal transduction mechanisms 
COG ID[COG1551] Carbon storage regulator (could also regulate swarming and quorum sensing) 
TIGRFAM ID[TIGR00202] carbon storage regulator (csrA) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000000424179 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGATTT TGACTCGTCG TGTGGGCGAA ACATTAATGA TAGGTGATGA AGTTACTGTG 
ACCGTTTTAG GTGTAAAGGG TAACCAAGTC CGGATCGGTG TGAATGCACC TAAAGAAGTC
TCTGTGCATC GTGAAGAGAT TTACCAACGG ATTCAAAACG AGAAATCTGA TCCATCTTCT
GAAAGCGGAA ATTTCTGA
 
Protein sequence
MLILTRRVGE TLMIGDEVTV TVLGVKGNQV RIGVNAPKEV SVHREEIYQR IQNEKSDPSS 
ESGNF