Gene Sden_1143 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1143 
SymbolnrdR 
ID4017316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp1314679 
End bp1315128 
Gene Length450 bp 
Protein Length149 aa 
Translation table11 
GC content48% 
IMG OID637955133 
Producttranscriptional regulator NrdR 
Protein accessionYP_562152 
Protein GI91792501 
COG category[K] Transcription 
COG ID[COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains 
TIGRFAM ID[TIGR00244] transcriptional regulator NrdR 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.086063 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCATTGCC CTTTTTGTAG TGCCACAGAT ACTAAAGTCA TAGATTCAAG GCTGGTGGCA 
GATGGTCATC AAGTTCGCCG TCGCCGTGAG TGCACTCTGT GCCACGAACG TTTCACCACC 
TTCGAAGGCG CTGAGCTTGT GATGCCTAGG GTGATAAAAC GTGATGATAC TCGTCAACCC 
TTCGATGAAG ATAAGCTCAG AGGCGGTATG CTGCGGGCAG TAGAGAAACG CCCTGTGTCC 
ATGGACCAGC TGGAGCAAGC CTTAACAAAA ATCAAATCAA CCCTGAGGGC AACCGGTGAG 
CGTGAAATTA ACTCAGAGAT GATAGGCAAT TTGATGATGG AACAACTCAT GCACTTAGAT 
AAAGTGGCCT ATATCCGTTT TGCCTCTGTC TACCGTGCCT TTGAAGATGT TTCACAGTTC 
GGTGAAGCCA TCGCCAAGTT AGAGAAGTAG
 
Protein sequence
MHCPFCSATD TKVIDSRLVA DGHQVRRRRE CTLCHERFTT FEGAELVMPR VIKRDDTRQP 
FDEDKLRGGM LRAVEKRPVS MDQLEQALTK IKSTLRATGE REINSEMIGN LMMEQLMHLD 
KVAYIRFASV YRAFEDVSQF GEAIAKLEK