Gene Sden_1092 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_1092 
Symbol 
ID4017375 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp1252906 
End bp1253565 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content46% 
IMG OID637955084 
Productribose-5-phosphate isomerase A 
Protein accessionYP_562103 
Protein GI91792452 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0120] Ribose 5-phosphate isomerase 
TIGRFAM ID[TIGR00021] ribose 5-phosphate isomerase 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.981456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACACAAG ATGAAATGAA AAAAGCCGCC GGTTGGGCTG CACTTAAATA CGTTGAAGTA 
GACAGCATAG TTGGCGTTGG CACTGGCTCA ACGGTTAATC ATTTCATCGA TGCATTAGCC 
ACAATGAAGC ACAATATCAA GGGTGCGGTA TCGAGCTCCG TCGCTTCCAC TGAGAAAATG 
AAAGCCTTAG GCATTGATGT GTTTGACTTA AATGAAGTGT CTGAACTATC GATTTATGTG 
GATGGTGCCG ATGAAATCAA TGCCCATATG GACATGATCA AAGGCGGCGG CGCAGCCCTT 
ACCCGTGAAA AAATCGTCGC CGCAGTGGCC GATAAATTTA TTTGCATCGT GGACAATACC 
AAGCAAGTCG ACGTGTTAGG TCAGTTCCCC TTACCGGTTG AAGTCATTCC TATGGCGCGC 
TCTTATGTTG CTCGTGAGCT GGTAAAATTG GGCGGCGATC CCGTCTATCG TCAAGGGGTC 
ATCACAGACA ATGGCAATGT GATTTTAGAC GTATACAACC TTAAAATATT GAACCCTAAG 
GCGTTAGAAA CTCAAATCAA TGCCATCGTA GGCGTAGTCA CCAATGGTCT GTTCGCCAAT 
CGCGGCGCTG ATATACTGTT AATGGGTACC CCTGATGGCG TAAAGACATC AACAAACTAG
 
Protein sequence
MTQDEMKKAA GWAALKYVEV DSIVGVGTGS TVNHFIDALA TMKHNIKGAV SSSVASTEKM 
KALGIDVFDL NEVSELSIYV DGADEINAHM DMIKGGGAAL TREKIVAAVA DKFICIVDNT 
KQVDVLGQFP LPVEVIPMAR SYVARELVKL GGDPVYRQGV ITDNGNVILD VYNLKILNPK 
ALETQINAIV GVVTNGLFAN RGADILLMGT PDGVKTSTN