| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1018 |
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| Symbol | |
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| ID | 4016586 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1161442 |
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| End bp | 1163478 |
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| Gene Length | 2037 bp |
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| Protein Length | 678 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637955010 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_562029 |
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| Protein GI | 91792378 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00123246 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGCAC GCTTTAAATC GCTAACGTGG AAACAGACTA ATCTCGTTGT GTTCACTGCG
CTGTTTTTCG CCATCGCCAT CTTCTTTGTT GAAGTCGCGT TGGTAGGCAT AGACACAAAG
CATCAATTAG AGAAAGAGCA GACTGAGCTG CTAGATTCTG TGGAGCAGAC TGCAGCAAAC
TCAGTGTGGG CACTGGATGA TAAGCTTGCA GAGCAGACCT TAAAAGGGAT CATGAAAGTC
GACAATATCA GCTCGGCGAG CATCACTCTC GATGACAATT CACTGTTTGT CACCGTCGCC
AACAACCAAG AATCAGTTCA AGATTACCAT GTCGCATTAA GTGAATTTCT GTTTGGACAC
TTGGAACAAG CGTCGCGCCC CTTGTATCGT CCCTTTTATT TTGAAGCCAA TAAAGAGCTG
CAACTCATTG GCACGTTAAC CATTATTTAT GATACCCATT CTTTAACCAA TAATCTTTTT
GGTCAGCTTA AATTTAGCTT TATCGCCACC TTAGCTCGAG CTCTTTTACT CACCTTAGTG
CTTTCCTTGG TTTTCCATCG ATTTCTGACC CAGCCTATCG CTAAAATTAG CGAGGCCATA
GATAAGATTG ACCCAGATAA TCCCGATGAA AACTTATTGC CAGCATCTAT TGCCCATAAA
GACGATGAAC TGGGACTGGT TACCAGTAAA TTTAATCAAA TTTTACTGCA ATTTAGCCAA
GCTCAGAACA AACTTAGAAA AATGGCCACC AGAGATCCCC TAACCGGTTT GCCCAATCGC
GCCCTTTTGC TAGAAACGCT CAGCGTCACC ATACAAAGAT CGCGAGTGCA CAAGCGCAGT
TTTGCTATTT TCTTCATCGA TTTAGACAGG TTCAAAAACG TCAATGACTC CTTAGGCCAT
ACCATAGGCG ATCAATTCCT TGCACGTATC GCGCGTATTT TGGAGCGGGG CATAGGCGAC
AAAGGCAGCG TGGCACGTTT GGGTGGCGAT GAGTTTGTGA TCTTGGCCGA TGAAATCCAG
ACTCCATCAC AGGCCGCTGA TTTCGTAGGT AAATTATTAT CACAACTCAA TACGCCTATC
CAACTTAATG AGCATTCTAT TCACCCTGCC GCCTCTATCG GTATCTCCAT TTACCCCGAT
GATTGTGCCA GTGCAGAAGA TCTTATTCGC CATGCCGATA TTGCCATGTA CAGCGCCAAA
GCGGCGGGTT CCAATCAATG GGCCTTCTTT AAACAGCAGA TGACAGAAAG AGCGGCAGTG
CGTTTGCGAA CTGAAGCTTC GTTACATGAC GCCCTTAAAA ATAATGAATT TGTACTGTAT
TTTCAGCCTA AGTTTGATTT GAAAACCAAT AAGGTTGTCA GCTGTGAAGC CTTGATCCGT
TGGCAACAGG ATGGCCGTTT AATCAGCCCT ATGTCATTTA TTCCGGTGGC CGAAGAAACG
GGGATCATAG TGCCCATCGG GCGCTGGGTT ATAGAGCAGA GCTGTAAAGT ATTGCGAGAT
TGGCAACGAA AATATAACTA TGTCATCCCC ATTGCGGTCA ATGTGGCATC ACAGCAATTT
GCCGATGCGA GCCTAGTACC TGATATTAAG CAATTAGCAC TCAGGTATCA GATCCGCCCA
GAACAACTAG AAATAGAGAT TACCGAAACG TCATTGATGA ACGACATTGA GCAGGCCATC
GCAAAACTGG AGCAACTCAA ATCAGCGGGT TTTAGAATTG CCGTGGATGA TTTTGGTACA
GGCTACTCAT CCTTATCTTA TTTACGACAC TTGCCTATCA CAACCATGAA GATTGACCGT
TGCTTCGTCA CAGACCTGCC TCATGACAGT GCTATTGCCT CAACTATCTT GATGCTAGGC
CAGCAGCTCA ATCTGGAAAT CGTTGCCGAA GGCATAGAAA ATGAAGAGCA GCTCAGTTGG
CTTAACGATC ATAATTGCCC AATAGGGCAA GGATTTTTCT TTAGCCAGCC GCTGCCATTA
GATGAATTTG AAACTAAGTA TCTGGCGGGG CAAACCGCTG AAATCGTTAC GCTTTAA
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| Protein sequence | MTARFKSLTW KQTNLVVFTA LFFAIAIFFV EVALVGIDTK HQLEKEQTEL LDSVEQTAAN
SVWALDDKLA EQTLKGIMKV DNISSASITL DDNSLFVTVA NNQESVQDYH VALSEFLFGH
LEQASRPLYR PFYFEANKEL QLIGTLTIIY DTHSLTNNLF GQLKFSFIAT LARALLLTLV
LSLVFHRFLT QPIAKISEAI DKIDPDNPDE NLLPASIAHK DDELGLVTSK FNQILLQFSQ
AQNKLRKMAT RDPLTGLPNR ALLLETLSVT IQRSRVHKRS FAIFFIDLDR FKNVNDSLGH
TIGDQFLARI ARILERGIGD KGSVARLGGD EFVILADEIQ TPSQAADFVG KLLSQLNTPI
QLNEHSIHPA ASIGISIYPD DCASAEDLIR HADIAMYSAK AAGSNQWAFF KQQMTERAAV
RLRTEASLHD ALKNNEFVLY FQPKFDLKTN KVVSCEALIR WQQDGRLISP MSFIPVAEET
GIIVPIGRWV IEQSCKVLRD WQRKYNYVIP IAVNVASQQF ADASLVPDIK QLALRYQIRP
EQLEIEITET SLMNDIEQAI AKLEQLKSAG FRIAVDDFGT GYSSLSYLRH LPITTMKIDR
CFVTDLPHDS AIASTILMLG QQLNLEIVAE GIENEEQLSW LNDHNCPIGQ GFFFSQPLPL
DEFETKYLAG QTAEIVTL
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