| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_1003 |
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| Symbol | |
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| ID | 4017600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1143049 |
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| End bp | 1143831 |
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| Gene Length | 783 bp |
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| Protein Length | 260 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954993 |
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| Product | triosephosphate isomerase |
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| Protein accession | YP_562014 |
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| Protein GI | 91792363 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0149] Triosephosphate isomerase |
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| TIGRFAM ID | [TIGR00419] triosephosphate isomerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.0343606 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGCACTCA GGCGTCCTAT GGTGGCGGGC AATTGGAAAA TGAATGGCAA TGCGGCACTG
GCCCAAGAGC TATTCAAGAA ATTTGCTTCT AAGCTCCAAA ATGATTCTGC TGAGGTGGTG
CTATGCCCGC CTTCAATATA CCTAGAAAGT GTTAGGCAAC TGCTTGAAGA TAATAAACAA
GCCTTAGATG GTGCGTTAGT TAGAATGGGC GCTCAAAATG TCAGTCAACA TGACTTTGGG
GCTTATACCG GTGAGATATC CGGGCAGATG CTAAAAGATT CAGGATGTCG ATATGTAATT
ATCGGACACT CCGAGCGCCG CCGTATGTAC GGTGAGACGA GTAACATAGT GGCAGAGAAA
TTCGCTGCCG CACAAAAACA TGGTTTGACC CCGATCCTTT GTGTCGGTGA GTCAGGTCCA
GCACGAGAAG CAAGACGCAC CTTTGAGGTG ATTGCCGAAG AGTTGGATAT AGTCATAGAA
AAAAACGGTA CCATGGCTTT TGATAACGCC ATTATCGCTT ACGAACCTTT ATGGGCCGTA
GGGACAGGTA AAAGCGCTAC ACCAGAGCAG GCGCAAGAAG TACATGCGTT TATTCGCAAA
CGTCTCTCTG AAGTGTCTCC CTTTATTGGA GAGAATGTCA GAATTTTATA CGGTGGTAGC
GTTACCCCTA GCAATGCGGC AGACTTGTTT GCCCAGCCCG ATGTTGATGG TGGACTGATA
GGCGGTGCTA GTTTAAACTC GAGCGAGTTT TTGAGCTTAT GTACCATAGC GATGAGTGCC
TAG
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| Protein sequence | MALRRPMVAG NWKMNGNAAL AQELFKKFAS KLQNDSAEVV LCPPSIYLES VRQLLEDNKQ
ALDGALVRMG AQNVSQHDFG AYTGEISGQM LKDSGCRYVI IGHSERRRMY GETSNIVAEK
FAAAQKHGLT PILCVGESGP AREARRTFEV IAEELDIVIE KNGTMAFDNA IIAYEPLWAV
GTGKSATPEQ AQEVHAFIRK RLSEVSPFIG ENVRILYGGS VTPSNAADLF AQPDVDGGLI
GGASLNSSEF LSLCTIAMSA
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