Gene Sden_0999 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0999 
SymbolrrmJ 
ID4017596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1137852 
End bp1138481 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content48% 
IMG OID637954989 
Product23S rRNA methyltransferase J 
Protein accessionYP_562010 
Protein GI91792359 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0293] 23S rRNA methylase 
TIGRFAM ID[TIGR00438] cell division protein FtsJ 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.00000545676 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGCTA AAAAACGAAC GGCCAGCTCA GCCCGCTGGA TGCAAGAACA TTTTGATGAT 
CACTATGTCA AACTCGCACA AAAAAGGGGG CTAAGGTCAC GTGCTGCATT TAAGTTAGAA
GAAATTCAGC AAAAAGATCA TCTTATCCGC CAAGGCATGA CAGTGGTGGA CTTAGGTGCC
GCGCCTGGCG GTTGGTCTCA GGTGGCGGTT AAGTTAGCCG GCGACAACGG TAAGGTCATT
GCCTGTGACA TTTTGCCTAT GGATCCCATC GTGGGCGTCG ACTTCTTGCA AGGCGACTTT
CGCGAAGAAA ATGTCCTCAA TGCGCTGCTT GACAGGGTAG GTGAGGACAA GGTTGATGTG
GTACTATCTG ACATGGCTCC GAATATGAGC GGTTCAGATG GCGTCGATCA ACCTAGAGCT
ATGTACTTGG TTGAATTAGC ATTAGAAATG TGTCATCAAG TATTGGCGCC TAATGGCTGT
TTTGCAGTTA AGGTCTTTCA GGGGGAAGGC TTTGATGAGT ACATAAAATC AGTCAAACAA
GCATTTAAAA CCGTAAAAAC ACGCAAACCA GACTCCTCTC GCGCCCGTTC TCGGGAAGTC
TATCTAGTAG CGACTGGATA CAAGTTGTAG
 
Protein sequence
MSAKKRTASS ARWMQEHFDD HYVKLAQKRG LRSRAAFKLE EIQQKDHLIR QGMTVVDLGA 
APGGWSQVAV KLAGDNGKVI ACDILPMDPI VGVDFLQGDF REENVLNALL DRVGEDKVDV
VLSDMAPNMS GSDGVDQPRA MYLVELALEM CHQVLAPNGC FAVKVFQGEG FDEYIKSVKQ
AFKTVKTRKP DSSRARSREV YLVATGYKL