| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0944 |
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| Symbol | |
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| ID | 4016889 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 1077649 |
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| End bp | 1081044 |
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| Gene Length | 3396 bp |
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| Protein Length | 1131 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954934 |
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| Product | transcriptional regulatory protein-like protein |
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| Protein accession | YP_561955 |
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| Protein GI | 91792304 |
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| COG category | [K] Transcription |
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| COG ID | [COG3710] DNA-binding winged-HTH domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.80445 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGACA ACATGTTCTT TTTCGGCGAC TGGCAAATCA ACCCTGAGTC AAACAGCCTG
CGTTGCGGCG ATGTGGTTAA ACAGCTCGAG CCTAAGGCCA TGGATGTGCT GTTATTACTA
TGCCAAAGTG ACGGCGATGT TTTAAGCAGC GACGACATAG TTAAGCTCTG CTGGGGCGAT
ATTCCCATGG GCGATAACCC AGTACATAAA GCCATCACTC AGCTACGCAA AGCCTTAGGC
GATAAAGCCA CCGCCCCCAC CTATATTGAA ACTATCCGTA AACGCGGCTA TCGCACCTTG
GCATCGGTTG AATTCCCCCT AGGGCATCAA ACCCATGCAG AAATAGCCAG TTGGCAAGGT
GAGTCTCCCT TCCCGGGCCT TAGGCCCTAC CAAGCCAAAG ATGCCCAGGT ATTTTTTGGC
CGTAGCGCCC AAATTAGCAC CCTGTTGGGG CGCATTGCAG AACAAGTCAA ATTCGGCCGC
GCGTTTTGCC TGTTATTAGG CCCAAGTGGC AGCGGTAAAT CATCCTTAGT CAACGCAGGC
GTCTTGCCTA ATTTAATGGG CCACAATGGC TATGATGGCA TAGGGGTTTG CAGCCATACC
ACGCTGGACT TAGCCGACGT CAGTAAAGAC AGGCTAATGA CAGATCTTGC CAGCGCTATG
CTCGACTGGG ACATCAATGA TGAGCCTGTG TTTGATGGCT TTTCCGCCGA CCGCTTAGCT
GCGCTGCTTG AAGAAGATAT CGATGCTGTA ATAAAACTCT GTAAGGCAGC CCTGCTCTCG
ACAAACTTAG CGGCCAGCTT AACTTCCAGC AGCGAGAATA CTGACACTAG CACCGCGCCT
TGCCATGCGA CATATGCAAC TCCTTTGCTG GCGCTGTTTG TCGATCGCCT CGAAGTGTTA
TTGTCATCAC CGCAGTTTAG CCAGCCCCAG CGTGAGGCCT TTGTTGCACT GCTAGAAACC
TTAGCCAATA GTGGCGCTAT TTTAGTCTTA AGTGCTTGTC GCAATGATTT CTACCCGAGC
TTAGTCAATT ACCCTAGCCT AATGGCGGGT AAGTCAAGCG GCGCTCATTT CGATTTAGCC
CCGCCTACTC GGGCCGAATT ACTGCAAATG ATCCGCCTGC CCGCAAGTGC TGCCGGCTTA
AGCTGGCAAC AGGATAATAC CAGCGCCATG GGCCTAGATG AGTTGCTCTG CGTTGAAGCT
GCAAGTAACC CCGATGCATT GCCCATGCTG CAATATACAC TGCAAGAGCT GTATCTGCAG
CGCAGCGAAT CTGGCGAGCT AAAACTTGAG GTGTTTCGCG CCCTTGGCGG CATAGAAGGC
TCCATTGGTA AAAAAGCCCA AGAAGTCACC AGTCAGTTAA GCCAAGCGGA TAACGCCAGT
CTTGCCAAGG TATTATCCTT GCTAGTGACC CTAAGTTTAG ATGAGAGCAA TATCACCAGC
CGCGCCGCCC GCTGGTCACA ACTCGAGGAC AAGCACCAAG TCGCCCTAGT GAAAGCCATG
GTGGAAAGTC GGCTGTTTGT GTCTCACCTG CAAAATGGTG AACCTTGCTT TAGCGTCGCC
CACGAGGCGC TGCTGCGCCG CTGGGATAAA GCCAAGCTGT GGATAGACGA TCATTTAGAC
AGCTTAAGCA TTAAGAGCCG CATTCATCAC CTTGCCAAAC GCTGGCGCGA TGAAGCCAAG
GGAAAAGCCT ATTTACTGGC AGAAGGCAAA CCGTTGCAAG AAGCTGTGGC ACTTTCATCC
AACCCATTGT TTAGTTTAGA CAATCAAGAG CAAGGCTTTA TTCAGACCTC CATCAAGCGG
GCGCAAATTA AGCGCTGGAC CCGCCGCATC ACCATCAGCC TCTTGTGCCT ACTGAGTTTC
ACTTCTGTGC TAATGAGCCT TAAGAGTTTA GATGCCGAGC AGCAAGCCTT AGAGAAACGC
CTAGAGGCTG AAAACTTGCT GGGCTTTATG GTGGGGGATT TTGCCGACAA ACTCAGAAGC
GTCGGCCGCA TGGATTTACT CGATGGCATC AGTAACAAGG CCTTAGAATA TTTCAGTCGC
GACGACGCAA ATCCAGAATC AAAGTCAAAT GCCAACAGCC TGCTGCCACA CTGGCTAAGT
ACCTCCCTTG GTTTCACTTC TAGCAAAGCC AGCTTCGAGG CCAGATTTCA ACACGCCCAG
ACCTTAGAAG CCATGGGCGA AGTCGCCTAT TCTCGCGGCA AATTGGATGA AGCCATTAAA
GCCTTTGAGG CTGCCAAACT GCTGCTGGAT AAGCTCTACA CAGAAGATAA AGCCAACCCA
ACTCTGCTCA AAGTCCTCGG CGCCAACGCC TTCTGGCTCG GGCAAATACC TTATGCTCAA
AGCAATTGGC CGCTCGCGGA AAAATACCTG ACTTTATACC GTGATTACAG CGATGCCTTG
ATGACACTGA CACCCGATGA TGTCGATGCC TGGGTCGAGC TTTCCTATGC CTTGAACTCT
TTGGGCAGTC TGGCGTTAAA ACAACTAGAT TATCAAGCAG CCAACACCGC CTTTAATCGT
TCGCTATCGT TAAAAACTCA GGCACTTGTT AAAGATCCAA AAAATGATTA TTTACGCTCA
GATAGAGCCG ATACCTTGAA TTGGTTAGCC AAGATTAATA TACCAATAGG AAACATAGAC
GAAGCTTTAA CACTCTATAA TGAAGCTCAG TTAGAACTTG AAATGCTGCT GACTAAGGCT
AATGATGATG CCAATCTGAT GAGCCGTTTA TCCTATATCT ACACTAATCA AGCTCAATTA
CTTCGCTATC AAAGTAAGTT CGAGCAAGCC ACAGTAAAGG CAAAAAAGTC AGCCCAATTA
CTAAAGAAAG CGCTAAAACA AGACCCAAGT AATGAACAGT GGAAGTCCGA TTTAACCCAT
GTTAGAGCAC TCTCTTTGGG GATTAGAACC CATGCTCCCT CGTTTCTAAT GCAAGAGTCT
GACGCATTAT TTCAGCAACA GATAAATACA ATAAATGCTA CCTTGCTAGA CACCTCTTCT
AAAATAAAAG CCATTACTAT AGAACTAGAG ATAATAAGGT CTCTACAAAA AACTAAAGCA
TTATCCGAAG CTGAGATTTT AATAGAGCAA GTTGAACAAC AGCTAAACAG TATAGCGAAT
GTAAGAAGCC GTGATTATGT AATCTCAAAC GTTGAATTTA GCATACTCAA AGCCTACCAA
TTGCAACAAC AAGCCCAAGC TGAGTTATCA TTAGCACTAT GCCAAAATAC AATAGATGAA
CTTGCACCTA TTATCCAAGA GACTACTGAG ATACAGCTTA TCTTAGCTTT CGTTCAAGCG
AATTCATGTG TTGGAAAAAC AAAGCCTATC ACTCAAGAAT GGCTACGCCT TCAAAGTATG
GGAATTAGTG GCAAAGGTTT TATTTTTATT GAGTAA
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| Protein sequence | MSDNMFFFGD WQINPESNSL RCGDVVKQLE PKAMDVLLLL CQSDGDVLSS DDIVKLCWGD
IPMGDNPVHK AITQLRKALG DKATAPTYIE TIRKRGYRTL ASVEFPLGHQ THAEIASWQG
ESPFPGLRPY QAKDAQVFFG RSAQISTLLG RIAEQVKFGR AFCLLLGPSG SGKSSLVNAG
VLPNLMGHNG YDGIGVCSHT TLDLADVSKD RLMTDLASAM LDWDINDEPV FDGFSADRLA
ALLEEDIDAV IKLCKAALLS TNLAASLTSS SENTDTSTAP CHATYATPLL ALFVDRLEVL
LSSPQFSQPQ REAFVALLET LANSGAILVL SACRNDFYPS LVNYPSLMAG KSSGAHFDLA
PPTRAELLQM IRLPASAAGL SWQQDNTSAM GLDELLCVEA ASNPDALPML QYTLQELYLQ
RSESGELKLE VFRALGGIEG SIGKKAQEVT SQLSQADNAS LAKVLSLLVT LSLDESNITS
RAARWSQLED KHQVALVKAM VESRLFVSHL QNGEPCFSVA HEALLRRWDK AKLWIDDHLD
SLSIKSRIHH LAKRWRDEAK GKAYLLAEGK PLQEAVALSS NPLFSLDNQE QGFIQTSIKR
AQIKRWTRRI TISLLCLLSF TSVLMSLKSL DAEQQALEKR LEAENLLGFM VGDFADKLRS
VGRMDLLDGI SNKALEYFSR DDANPESKSN ANSLLPHWLS TSLGFTSSKA SFEARFQHAQ
TLEAMGEVAY SRGKLDEAIK AFEAAKLLLD KLYTEDKANP TLLKVLGANA FWLGQIPYAQ
SNWPLAEKYL TLYRDYSDAL MTLTPDDVDA WVELSYALNS LGSLALKQLD YQAANTAFNR
SLSLKTQALV KDPKNDYLRS DRADTLNWLA KINIPIGNID EALTLYNEAQ LELEMLLTKA
NDDANLMSRL SYIYTNQAQL LRYQSKFEQA TVKAKKSAQL LKKALKQDPS NEQWKSDLTH
VRALSLGIRT HAPSFLMQES DALFQQQINT INATLLDTSS KIKAITIELE IIRSLQKTKA
LSEAEILIEQ VEQQLNSIAN VRSRDYVISN VEFSILKAYQ LQQQAQAELS LALCQNTIDE
LAPIIQETTE IQLILAFVQA NSCVGKTKPI TQEWLRLQSM GISGKGFIFI E
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