| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0923 |
|---|
| Symbol | |
|---|
| ID | 4016829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 1052993 |
|---|
| End bp | 1053775 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954913 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_561934 |
|---|
| Protein GI | 91792283 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2912] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.00500148 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATAAAC TTATGGATGA CATACGCATC CCAGAAAGCG CATTTGAAAT TTGTGAACAC
TTAGGGTTTA CGCAGGCGAA ATCGGCTCAA TGGGCCTGGT TTGAGCTTGC TGGCGCCGTA
TTAAGTCATT ATGTGGTTAA TCAAGAGCAG CGTCTCAATG GTTTGCTGCG ATGGTTTTAT
CAAGACTTAG GTTTTAGAGT TCGCGATGAC TATTTCAGCA TTGAAGCCGC TGACTTAGGC
CAGTGCATAA TGACCCGCCA AGGCAATAGT ACCAGTCTAG CGACTGTGCT GGTGTTACTG
GCCAAGCAAC TGGATTTACA GCTAGAAGCC GTGCTGTTGC CTGGTAATAC TGTGCTGAAA
AGTACCGTTA ATGGGGTGAT CAAGTATCAT GACCCACTGA CGGGGGGCGA GCTGACTAAA
CATGGGCTTA AATCCCTCGT TCGCGGCGAG TTAGGCAATG AAGCTAGGCT AAAGCCGAGC
CATCTAAAGC CTGCGACTCT TAAGCGTTTA CTGAGCCGAA TGATCCACGA ACTTAAAGCC
GGCTCCATAG TAAAACACAA GTTTGAACCT GCCATGGAGT GCTGCAGTCT ACTGCTGCAA
TGGCACCCTG ATGATGTGCA TTTAAACCGT GAGCGGGCTT TTATCGCCCA ACAACTGGGT
TGCATTAAGG TGGCCATGTC AGATCTTCAA CATTTTATTG ACAACAGTCC CCACGATCCT
GTGATAGAAC TGGTCAAAAT ACAGTTAAAA GAGTTGAGCC AACAAGCACA GACCTATCAT
TAA
|
|---|
| Protein sequence | MDKLMDDIRI PESAFEICEH LGFTQAKSAQ WAWFELAGAV LSHYVVNQEQ RLNGLLRWFY
QDLGFRVRDD YFSIEAADLG QCIMTRQGNS TSLATVLVLL AKQLDLQLEA VLLPGNTVLK
STVNGVIKYH DPLTGGELTK HGLKSLVRGE LGNEARLKPS HLKPATLKRL LSRMIHELKA
GSIVKHKFEP AMECCSLLLQ WHPDDVHLNR ERAFIAQQLG CIKVAMSDLQ HFIDNSPHDP
VIELVKIQLK ELSQQAQTYH
|
|---|
| |