| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0901 |
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| Symbol | |
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| ID | 4016710 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 1026943 |
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| End bp | 1029150 |
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| Gene Length | 2208 bp |
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| Protein Length | 735 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 637954891 |
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| Product | TonB-dependent receptor |
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| Protein accession | YP_561912 |
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| Protein GI | 91792261 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGATAAGAC GTATCCTTCA ACTAGTCTCG CCTCAAGTCT CGGGGCGAGT GCTCAGCTTG
GTACTCGCCA GCTTGGTACT CGCTTTAGTG CCACAGCACT CTTTGGCAAC TGACGCTAAG
ACTGACGCAA GTGCTGACCT TAATGCTGGC CTTAAGACAG ACGCTAACGC AAAGGTTAAG
CAAGCTAGCA GGCCTGCTTC AGAAACAAAA CACACAGCAC AGACTATCAA ACCACGCCCT
CTTGAAGTGT TAACCATCAC CGCAAGCCGC CAGGCTATGG CAATCAAACA CAATAGCACT
AGCATCAGTG TGGTCGATGA ACACCAACTA CAAGCTATCG GTCACCAACA CATCAATCAA
ACCCTAGCTC GGGTTCCCGG CAGTTGGATA AGCAGGGGAA ATGGTCAAGA ACATTTAAGC
GCGATACGAT CGCCAGTGTT AACTGGGGCA GGGGCTTGTG GGGCATTCTT CATGGCAGAA
GATGGCATTA GTCTAAGAGC TGCGGGCTTT TGTAACGTCA ATCAGCTGTT TGATACTAAT
ACCGAGCAAG CGAGCCGTAT CGAAGTCATC CGAGGGCCTG GCAGCGTGCT CTATGGGGCC
AATGCCGTGC ACGGCACCAT CAATATTATT AGCCCGGATA TGTTTGTGCC AAGGGATGAA
TATTTAAGCC AGGAAATTGG CCCAGACAAT TACTGGCGCA GCAGTGTCAG CACTCAAAGT
GTCAAGAATA ACCATGCCTT AGGAGTGTAT GCTAATGCGA GCCATGATGG TGGCTACCAA
GAGGGCAGTG GCTATGAACA GCAAAAGCTT AATTTGGTTC ATCAGTATAT GCAGGATGCG
TTCTCGGTAA AAAGCATGTT GAGCACCAGC CACATTAACC AACAAACCGC CGGGTTTATT
CGCGGTAAAT TCGCCTATAA AGATGAGGCG TTAAAGCGTC AAAACTCCAA TCCAGAGGCG
TTTCGCCATA GCCAATCTTG GCGTGCCTAT AGCCGGCTTA GCTGGGAAAT GCCGGGTAGC
GAGCAAGATA GCGAACTGAA CATTACCCCT TATCTGCGTT ATAACAAGAT GACCTTCCTG
CAGCATTATT TCCCTTGGCA GCCAGAGGAA GACAACAGTC ATCGCAGTAT GGGCATCAAG
AGTGTTTACT CGCAACACCA AGGCGAGTTC AGCTGGCATG GAGGGCTAGA TCTGGAATTT
ACCCAAGGTC AGCTACAAGA AACTCAAAAA GGGGCGTTCT CTGCGAGTAT TCCCCAAGGG
GCACACTATG ATTATCGCGT CGATAGTCGC AGCATGTCTC CTTTTGTCGA TGTCGACTGG
TTTGCCACTC AAGTCCTCAC AGTCAACCTA GGGGTTCGCT ATGATCATAT TGTTTACGAC
TATGATAACC GCTTAAGCTC AGGCAGTGCT TGTGACTTAG GGGTTTCAAA CTGTCGCTTC
TACCGCCCCG AAGATGAAAC TCGCAATTTT GGCCACTGGT CGCCCCGTTT AGGCTTGGTA
TATCAAGTTA ATGAGCAATT GAACCTGTAT GGGGAATTAG CCCAAGGCTT TCGAGCCCCC
CATACTAGTG AACTGTACCG ATTACAGGCA GGGCAAATCA GTGCCGATTT GGATACTGAG
CAATTAACCA GCATTCAATT TGGCCTCAGA GGCTATTTAG ACAGTTTTTC CTATGAGCTT
AGTCTCTACC AAATGCATAA AAGTCATTTC ATTTTTCAAG ATAGCCAGAG TCAATATGTC
GGCAACGGGG AAACTCAGCA TCTAGGGTTT GAGTTTTCAC TCTCTTACGC ATTTAACGAC
CAATGGATGC TCTCATTAGG GGGCAGTGTT GCCGAACATG AATACGCCAA TGACCTGCGG
CTAATTGATG AGAGCATTGA GGGTAATCAG ATTGATACCG CGCCGAAGGA AATGCTCAAT
ACCCGTGTAA GTTGGACGCC CAGCACCAAT CTGCAACTGG AGTTAGAATG GCAGCACTTG
GGCGAGTATT ACCTAAACCC AGAGAATAGC GCCAGTTATC CCGGTCATGA CCTGCTTCAT
TTACGCGGCC AAGTTCAAAT AAGCGATAAG CTTGCGCTGT CACTGCGACT GAACAACGTG
TTAGATAAGG ATTATGCCGA GCGGGCCGAC TTTGCCTTTG GCTCCTACCG TTACTTCGTT
GGGCAGCCTA GATCAGTTTT CCTCACCCTG CGCTATCAAA TGGACTAA
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| Protein sequence | MIRRILQLVS PQVSGRVLSL VLASLVLALV PQHSLATDAK TDASADLNAG LKTDANAKVK
QASRPASETK HTAQTIKPRP LEVLTITASR QAMAIKHNST SISVVDEHQL QAIGHQHINQ
TLARVPGSWI SRGNGQEHLS AIRSPVLTGA GACGAFFMAE DGISLRAAGF CNVNQLFDTN
TEQASRIEVI RGPGSVLYGA NAVHGTINII SPDMFVPRDE YLSQEIGPDN YWRSSVSTQS
VKNNHALGVY ANASHDGGYQ EGSGYEQQKL NLVHQYMQDA FSVKSMLSTS HINQQTAGFI
RGKFAYKDEA LKRQNSNPEA FRHSQSWRAY SRLSWEMPGS EQDSELNITP YLRYNKMTFL
QHYFPWQPEE DNSHRSMGIK SVYSQHQGEF SWHGGLDLEF TQGQLQETQK GAFSASIPQG
AHYDYRVDSR SMSPFVDVDW FATQVLTVNL GVRYDHIVYD YDNRLSSGSA CDLGVSNCRF
YRPEDETRNF GHWSPRLGLV YQVNEQLNLY GELAQGFRAP HTSELYRLQA GQISADLDTE
QLTSIQFGLR GYLDSFSYEL SLYQMHKSHF IFQDSQSQYV GNGETQHLGF EFSLSYAFND
QWMLSLGGSV AEHEYANDLR LIDESIEGNQ IDTAPKEMLN TRVSWTPSTN LQLELEWQHL
GEYYLNPENS ASYPGHDLLH LRGQVQISDK LALSLRLNNV LDKDYAERAD FAFGSYRYFV
GQPRSVFLTL RYQMD
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