Gene Sden_0868 details

Gene Information

• Locus tag: Sden_0868
• Symbol: lipB
• ID: 4017063
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: -
• Start bp: 991727
• End bp: 992410
• Gene Length: 684 bp
• Protein Length: 227 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637954858
• Product: lipoate-protein ligase B
• Protein accession: YP_561879
• Protein GI: 91792228
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0321] Lipoate-protein ligase B
• TIGRFAM ID: [TIGR00214] lipoate-protein ligase B

Plasmid Coverage information

• Num covering plasmid clones: 27
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCCAAC TTTTTTACAA GGGAGAGGCA CTGTTGCTAC CTCAAACGCT ACATATCAGG 
CACCTTGGTC AGCAAGATTA CCAGACAGTT TGGCATGCGA TGCAAGCCTA TACCGACAAT 
CGCGGCGCAG ACAGTCAAGA TGAGCTGTGG ATTGTGGAGC ACACACCCGT GTTCACCCAA 
GGGCAGGCAG GCAAGAGCGA GCACATACTA AACCCGGGTG ATATCCCTGT CATTCAAGTG 
GATAGGGGCG GTCAAGTGAC CTACCATGGC CCGGGACAAT TAGTCGCCTA CCCTTTGATT 
GATATCAAGC GCGCCAAATT AGGGGTGCGC CAATTGGTTA ATCATATCGA GCAAAGCATA 
ATCGATATGC TTTCCCCTTA TGATATTAAG GCCTACGCCA AAACGGATGC CCCTGGGGTG 
TATGTCGATG AGCGTAAAAT AGCCTCTTTA GGCCTTAGAA TTCGCAAAGG CTGCTCTTTC 
CACGGTTTGG CATTAAATGT CGACATGGAC TTAGCTCCTT TTAGGCGCAT CAACCCTTGC 
GGCTATGCAG GGCTTGAAAT GGTGCAATCG AAAGCATTAA ATGGACCGCA AAGCGTGGTG 
GAAGCCGGAG ATAAACTTAT CGACACTTTC ACTAAAACCT TAGGTTACCA AGAAGTTATC 
CACCACCAAG GATTAGCAGA ATAA 

 

Protein sequence

MSQLFYKGEA LLLPQTLHIR HLGQQDYQTV WHAMQAYTDN RGADSQDELW IVEHTPVFTQ 
GQAGKSEHIL NPGDIPVIQV DRGGQVTYHG PGQLVAYPLI DIKRAKLGVR QLVNHIEQSI 
IDMLSPYDIK AYAKTDAPGV YVDERKIASL GLRIRKGCSF HGLALNVDMD LAPFRRINPC 
GYAGLEMVQS KALNGPQSVV EAGDKLIDTF TKTLGYQEVI HHQGLAE