Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0747 |
Symbol | |
ID | 4016853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 868759 |
End bp | 869670 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637954732 |
Product | tyrosine recombinase XerD |
Protein accession | YP_561760 |
Protein GI | 91792109 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0000635712 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGCTTGTGA ATAAGAGTTC AGTAACAGCC GACCCCATCA TTGATGTTTT CTTAGATGCA CTTTGGTCCT CAAAAGGCTT AAGCAATAAT ACGCTTGCCT CCTACGGCAC AGATTTACGC CATTTTCAGC GCTACCTTGC AGCTCAACAA CTCAACTTAT TAGATGCCAG CCAAGAAACT GTTCGCCAAT ACCTTGCTTG GCGGCAAGAG CAAGGTTTTG CTAAAAGCAG TAGCGCCAGA CTGATGAGTA GCTTAAGGCG TTTCTACGCT TATTGGTTAT CGCTTAAACG CATTGCTATT GATCCTTGTG CCAAATTGGC TTCACCTAAG CTGAGCCGGG GGCTGCCTGC GGCGCTAAGT GAGGCCGAGG TCGATGCACT CTTGTCAGAG CCAGCAGCTG ATGACCCCAT AGAAATACGG GATAAAGCCA TGCTTGAACT CTTATATGCC ACAGGCCTTA GGGTGACAGA ATTAGTGAGT TTGACCATGG ATCAGATAAG CCTGCGCCAA GGTCTAGTGC GTATTACAGG TAAAGGTGGA AAAGAGCGAC TAGTGCCACT TGGGGAATTG GCGGTGGCAG AAGTTGACAC TTACTTGAGT TTAGCCCGCA GTGAGTTACT CAAAGGCAAG CAAAGTGAGG TGTTGTTTCC CTCCAAACGC GGCACCATGA TGACGCGGCA AACCTTCTGG CATCGTATTA AGCATTATGC CCTGCGGGCG AGTATTGCCA CTGAGCTTTC ACCCCACACC CTGCGTCATG CATTTGCGAC TCATCTTCTT AACCATGGCG CAGATTTAAG GGTGGTACAG CTACTTTTAG GCCACAGTGA CTTGTCGACC ACGCAAATTT ACACCCATGT GGCTAAGGCG CGCTTACAAG ACTTACACAG ACAACATCAC CCTAGAGGTT AG
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Protein sequence | MLVNKSSVTA DPIIDVFLDA LWSSKGLSNN TLASYGTDLR HFQRYLAAQQ LNLLDASQET VRQYLAWRQE QGFAKSSSAR LMSSLRRFYA YWLSLKRIAI DPCAKLASPK LSRGLPAALS EAEVDALLSE PAADDPIEIR DKAMLELLYA TGLRVTELVS LTMDQISLRQ GLVRITGKGG KERLVPLGEL AVAEVDTYLS LARSELLKGK QSEVLFPSKR GTMMTRQTFW HRIKHYALRA SIATELSPHT LRHAFATHLL NHGADLRVVQ LLLGHSDLST TQIYTHVAKA RLQDLHRQHH PRG
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