Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0729 |
Symbol | |
ID | 4016645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 843047 |
End bp | 845017 |
Gene Length | 1971 bp |
Protein Length | 656 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637954714 |
Product | TonB-dependent receptor, plug |
Protein accession | YP_561742 |
Protein GI | 91792091 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4206] Outer membrane cobalamin receptor protein |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000000181168 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGGTACTA AACCAACAAA AATTTCATTA TCCCTGACGG CCATTCTTGG CCTCTCTACG CTGGCTTCAC CGCTTTATGC CGCGCCCGTG AGTGAGCAGG GTGTCAAACT TGATGACACT ATGACTGTTA TAGGTCGCAG TGACAAATCC ACATTAAGCA TAGCCGCTAA TGTCACAGTG CTTGATGCTA GCGACATTGA AACCAGTGGC GCCACCAATT TGGTGCAGCT ATTGCGCAGC CGCAGTGGCA TACAAGTGAC TGACAGTAAT TCAGGCGCCG TGTTTGCTAT GCGTGGCTTT AATGCCGAAC AAGCGGCTAA TAATACCTTA GTGTTGATCG ATGGACGCCG TCTTAACAAT ATTGATATCG CCGCCCCAAG CTTAGATGCC ATTGCGCTTA ATCAAATTGA GCGGATTGAG ATTTTGTCTG GCAGTGCCGG TGTGCTCTAT GGCGATCAAG CTGTGGGCGG GGTGATTAAT ATTATCACTA AGTCTTCTGA GCATACCCGC GCTGGCTTAC AAGTCTCGGC AGGGAGTTTT GATACCACTG AATACCAAGG TGATGTCGCA GGCGCGATTA ATGAGCAGTG GCGTTATGTG GCGGCGGCCA ATTATAAAGA GTCTGATAAT TATCGCGATC ACAATGAAAG CGAAACAGGT TCGGTTTTTG GCCGATTAGA TTATCAGTCT GCAGAGACGC ACTTTTATTC AGAAGTGAGT TATTATGATA ACGATCGCCA GTTGACCGGC GGATTAAGCC AAGCTGAGTT TAACGCCAAT CCAAGGAGAG CACCTTTAAC CAGTGTTGAT GACTATCAGC ATGAAATCGC CACGGCTGTG CGCAGCGGTT ATCATCAACA AGCCTCAGAA AACTGGGTGC TGGGCGGTGA TATGAGCTAC ACAGATTCAA ATACCCATTA TACTAATTTT GGTTTTGCAG GTGATAACAA GCGTAATCAA TTGAGCGTAA TGCCAAAAGC TGTGGCGACT TTCTCTACCT CAAAGGGGAG TTTAGACCTA GTGACGGGGA TTGATTATCA CTTAAGTGAG TCTGAATTTA GTTGGGGTCG CAGCAATACT CAGACCCAGC AAGCGGCCTA TGTGCAAGCG ACAGTGCCAC TAGCCACCAG CCTGAGCTAT GTTGTTGGCG GCCGCTATGC AAAGGCAGAA GATGAACTCG TCGATGGCAG TGCATATCCT AATGGTGCCG AGCTTGATCA AGATGCTAAG GCCTTTGAGC TTGGGCTTAA TTACCGCCCT TATGCATCCC AACGGTTATA TGTGCGCGCT GAAGATAACT TCCGCTTTGC TAAAGTGGAT GAGCAAGCTT ACACCTCAGC AGGTGTGATC GGGCTTAAGC CACAAACGGG TCGCTCCTAT GAGGCGGGTT GGGATTTGAT ACTTGCAAGT CACGTTGTGA AACTTAGCTT GTATCGCCTT AGCCTTGAAG ATGAAATCGT GTTCGATCCT AGTGCGCCAA AGCCAAATGG CGGCTTCTTT GACGGAGCTA ACGTGAATGC CGATGCATCA CGCCGCTATG GCGCGAGCGC CAATTGGGAT TGGCAGCTGA TGACGGATTT AGCTTGGGGC GTTGAGTATC ATTATGTTGA TGCGCAGTTC ACTCAAGGTG CAAACAAGGA TAAGGCACTG TCATGGGTAG CTTCGCACAG CGGCAGAAGT TACTTAAGTT ATGACATAAA CGATGAATGG CAGTTCTATA CCGAAGCAAG TTATACCGGA AAACGCTATT TAGGTGGCGA TAATGGTAAT CTTGAGCCAG AATTAGACAG TTATTTATTG ACCAATATGG CACTACATTA TCGCAAGGCT ATGTGGTCAG CGAGTGTAAG GTTAGATAAT CTCTTTGATG AAGAGTATGC CAGTGCTGGT TTTTATAGCG CATGGGGCAG CCACGGTTTT TATTCTGGTG ATGGACGCAG CATTCGCTTA ACCGCGGGTT ATCGCTTCTA A
|
Protein sequence | MGTKPTKISL SLTAILGLST LASPLYAAPV SEQGVKLDDT MTVIGRSDKS TLSIAANVTV LDASDIETSG ATNLVQLLRS RSGIQVTDSN SGAVFAMRGF NAEQAANNTL VLIDGRRLNN IDIAAPSLDA IALNQIERIE ILSGSAGVLY GDQAVGGVIN IITKSSEHTR AGLQVSAGSF DTTEYQGDVA GAINEQWRYV AAANYKESDN YRDHNESETG SVFGRLDYQS AETHFYSEVS YYDNDRQLTG GLSQAEFNAN PRRAPLTSVD DYQHEIATAV RSGYHQQASE NWVLGGDMSY TDSNTHYTNF GFAGDNKRNQ LSVMPKAVAT FSTSKGSLDL VTGIDYHLSE SEFSWGRSNT QTQQAAYVQA TVPLATSLSY VVGGRYAKAE DELVDGSAYP NGAELDQDAK AFELGLNYRP YASQRLYVRA EDNFRFAKVD EQAYTSAGVI GLKPQTGRSY EAGWDLILAS HVVKLSLYRL SLEDEIVFDP SAPKPNGGFF DGANVNADAS RRYGASANWD WQLMTDLAWG VEYHYVDAQF TQGANKDKAL SWVASHSGRS YLSYDINDEW QFYTEASYTG KRYLGGDNGN LEPELDSYLL TNMALHYRKA MWSASVRLDN LFDEEYASAG FYSAWGSHGF YSGDGRSIRL TAGYRF
|
| |