| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0572 |
|---|
| Symbol | |
|---|
| ID | 4016545 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 646407 |
|---|
| End bp | 648740 |
|---|
| Gene Length | 2334 bp |
|---|
| Protein Length | 777 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637954557 |
|---|
| Product | GGDEF domain-containing protein |
|---|
| Protein accession | YP_561585 |
|---|
| Protein GI | 91791934 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAG AGCTTCCGTT AAAAACGGCC CCAGTACAGC GTGACAGCCT GGGACGATGG
ATACTCAATT GTATGGCTGC AGTACTATTG ACTGTCAGCG CCTTTTTCTT ATGGGGGGCA
CATAGCCTAG TTGATTCTCG CTTCGATAAT TTTGATGCAA GTGTCTATGA GCAACAGCTT
TTGCGAGTCA GTGGCATCTT TGAGCAAAAT CGCCTTTCCT TTGAGCTTCA GGTCAATGAT
TATGCCAGAT GGGACCATAC CGAAGCGTTC GTGTTAAATC AGCAGCCAGC TTATATAGAA
GAAAATCTGT TTCCTACTTC TTTAGCGAAT ATTCAAGTCG ATGGTTTTAT CTTTACCCGT
CTCGATGGCA GCCTAGTTAC ACCGCCGCTG TTACGAGTTG GTGCCGAGCT CACCCCTATG
CCTGACCCTA TGTGGGAAGC CATTAGCCAG CAGCTGCCCT CCCTGATTAA GAATGACAAA
AGCACGGCCC ACACTCGATT CGTCTGGTTT GAAGATGAGG TCATTATGGT CTCTGGTACT
CATATCACTG ACACAGCTCA GGCTAATGCC CCCAGTGGCT ACCTCTTCTT TATCCGTCAT
CTTGATGAGG CTAGATTGGG TGCTCTGCGT GAACTCACTG GCGTTAATTT TAGATTGGCA
CAAACAACCA GCATGGATAC CGTTGAAACT CAATTTACTT ATAAGCGCCA TAAGAGTCAT
CCCCATTGGC TTACAAGCAT GAATTTAACG GGGTTACCTG CACTTATTCA AGTTCAAGGA
AGCACACATT TACAAGCCGA ACGCCAGTTA ACCTTTACTT TGTTAGCCTT TAGTGTGGCA
GGGCTTAGCA TAGTGGCTTT GTTTGGGATT TATTGGCTTA TTCATCTTAA GGTAATAAGA
AGGCTAGAGT TATTTTCAAA GCTTGCGGAT AAAAATCGGC AAACACGTGC TCAGTCGATC
CGCTGGCCCG TCTCGGGCAG TGATGAACTC GATAATTTAG CTTCATCCAT GAATGATTTT
ATTACCGAAG TTGAAGTGAG GCACAAGGAG CTAAACTACT TAGCCAACCA TGATCCACTG
ACGGGTATAG GTAACCGCCG CTTGCTCATG GCGAGTCTTG ACGACAAGAT GGAACTATTG
AAAAGCAACC CAAAATTTAC CTGTAACTTA CTGTTACTGG ATATAGATCA ATTTAAGCTA
TTCAATGACG GCTTGGGTCA CGCAGCAGGC GATGAGATAC TCTGTTTAAT CGCTAAACGT
CTAAGTACGA AGGTAAAAGA TTCAGATACG TTAGTGCGTT TGGGTGGCGA TGCCTTCGCT
ATTTTACAAG AAAATGTGTC CCTAGCCTCT ACCCAAGACT TTGCTACGGA TTTACTGCAA
CATCTTGCCG TTCCATTCGT ATATCAAGAG CATCAGCTTA ATCTGCGCGC CTCGATTGGT
TTTGCACAAG TTAAGTTAAA GCTTTCCAAG GAGGATGTGA TACGCAATGC CGATTTGGCC
ATGTATGAAG CGAAGCGCAG AGGTAAAAAT CAGGTTGCCA TTTTTACCGT TAATTTACTC
GATACTGTGT CTAGGCGGAT GCATTTAGAG CAGGCGCTCC GAGAAGCATT AAATCAGCAG
AGTCTTGAAG TGTGGTTTCA ACCTATTATA GATGCACGCT ATGGCAAAAT CGTTGGTATG
GAGGCGCTCT CGCGCTGGTC ATTGGAGGGG GAATATATCC CCGCGGACGA ATTTATTAGT
ATTGCCGAAG CCTCAGGGAT GGTTGCTCAA CTTGGTAAGC AAGTGTTAGA TAAGGTGGGG
GCAGTATTAC AAGAACTACG CCTGCAATAC CCAGCCCTTG AGTGTAATGT TAACCTGTCT
GTACAGCAAT TTCGTGATCC TCAATTGATA AGCGATATAG TCGCTTGTAG AGTAAAATAT
CAGCTACCTG CATCAGCACT GCATCTTGAG TTAACCGAGA GCATGATTGC ACAATCTGAG
AGCGAAATTT TACCCATAAT GAGAGCCTTA GTTAACCAAG GTTTTAAATT CCATTTAGAT
GATTTTGGTA CCGGCTACTC TTCTTTAGAG CGCTTAAAAC ACTTGCCATT TGATACGCTA
AAAATTGATC GCAGCTTCAT CACCCCTCTT AGCCTAGGGG ATGATGTCAT GGTAAGAAAT
ATCATCAACA TAGGTCATGA ATTGGGCATG AACCTCATTG CTGAAGGTGT CGAAAATGAA
CGAGAGCTTG AACATTTATT ACAGCTTGGT TGCAATCAAA TCCAAGGCTA CTATTTTGCG
CGGCCTATGC CTTACCATGC CTTAAAAATA TGGCTTAAAG AACACCAAGA TTAG
|
|---|
| Protein sequence | MQKELPLKTA PVQRDSLGRW ILNCMAAVLL TVSAFFLWGA HSLVDSRFDN FDASVYEQQL
LRVSGIFEQN RLSFELQVND YARWDHTEAF VLNQQPAYIE ENLFPTSLAN IQVDGFIFTR
LDGSLVTPPL LRVGAELTPM PDPMWEAISQ QLPSLIKNDK STAHTRFVWF EDEVIMVSGT
HITDTAQANA PSGYLFFIRH LDEARLGALR ELTGVNFRLA QTTSMDTVET QFTYKRHKSH
PHWLTSMNLT GLPALIQVQG STHLQAERQL TFTLLAFSVA GLSIVALFGI YWLIHLKVIR
RLELFSKLAD KNRQTRAQSI RWPVSGSDEL DNLASSMNDF ITEVEVRHKE LNYLANHDPL
TGIGNRRLLM ASLDDKMELL KSNPKFTCNL LLLDIDQFKL FNDGLGHAAG DEILCLIAKR
LSTKVKDSDT LVRLGGDAFA ILQENVSLAS TQDFATDLLQ HLAVPFVYQE HQLNLRASIG
FAQVKLKLSK EDVIRNADLA MYEAKRRGKN QVAIFTVNLL DTVSRRMHLE QALREALNQQ
SLEVWFQPII DARYGKIVGM EALSRWSLEG EYIPADEFIS IAEASGMVAQ LGKQVLDKVG
AVLQELRLQY PALECNVNLS VQQFRDPQLI SDIVACRVKY QLPASALHLE LTESMIAQSE
SEILPIMRAL VNQGFKFHLD DFGTGYSSLE RLKHLPFDTL KIDRSFITPL SLGDDVMVRN
IINIGHELGM NLIAEGVENE RELEHLLQLG CNQIQGYYFA RPMPYHALKI WLKEHQD
|
|---|
| |