Gene Sden_0506 details

Gene Information

• Locus tag: Sden_0506
• Symbol: rplM
• ID: 4017105
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 575953
• End bp: 576381
• Gene Length: 429 bp
• Protein Length: 142 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 637954492
• Product: 50S ribosomal protein L13
• Protein accession: YP_561521
• Protein GI: 91791870
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0102] Ribosomal protein L13
• TIGRFAM ID: [TIGR01066] ribosomal protein L13, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 1
• Plasmid unclonability p-value: 0.0000000000158843
• Plasmid hitchhiking: No
• Plasmid clonability: decreased coverage

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAGACTT TTACTGCTAC GCCAGAAACT GTAACTCGTG ACTGGTTTGT TGTTGACGCT 
GAAGGCAAAA CTTTAGGTCG TATCGCAACT GAAATCGCAA TTCGCTTACG CGGCAAGCAT 
AAGCCAGAAT ACACTCCACA CGTTGACACT GGTGACTACA TCATCGTTAT CAATGCTGAA 
AAAGTGACTG TAACTGGTAA CAAAGCTGCT GGTAAGATTT ACTACTCGCA TTCAGGCTTC 
CCTGGTGGCA TTAAGCAAAT CAGCTTCGAA AAGCTGCAGG CGCAAAAGCC AGAAATGATC 
ATCGAGAAAG CAGTTAAGGG TATGTTGCCA AAAGGTCCAT TGGGCCGCGC TATGTTCCGT 
AAACTTAAAG TTTACGCTGG CGTTGAGCAT AACCACGCTG CACAACAACC TCAAGTTCTT 
GATATCTAA 

 

Protein sequence

MKTFTATPET VTRDWFVVDA EGKTLGRIAT EIAIRLRGKH KPEYTPHVDT GDYIIVINAE 
KVTVTGNKAA GKIYYSHSGF PGGIKQISFE KLQAQKPEMI IEKAVKGMLP KGPLGRAMFR 
KLKVYAGVEH NHAAQQPQVL DI