| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0474 |
|---|
| Symbol | |
|---|
| ID | 4016657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 544986 |
|---|
| End bp | 547073 |
|---|
| Gene Length | 2088 bp |
|---|
| Protein Length | 695 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 39% |
|---|
| IMG OID | 637954460 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_561489 |
|---|
| Protein GI | 91791838 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGCTC TTTTCCCCCA AAAAAAATGC CCTTTTATCT TCCAGTCGGA AAATAGTGAG
TGCGGTTTAG CTTGCCTCGC CATGATCTCC AGTTTTTATC AAAGAAAAAC CGATTTAATG
ACCCTCAGGA AACAACTGGG TTACAGTGAA TCTGGGATGT CGGTACGCAC CTTGTGTGAA
TATGCTGAGC AGATAAACTT AGACTCTAGG CCGCTACAGG TCGATGTTCA CGAGATAGAT
CAACTTCGCT TACCCTGCGT ATTACATTGG GACTTGAATC ATTTTGTTGT GCTCACACAG
TGCAGTAAAA AATCTGTAAC GATTCACGAT CCTGCTATTG GTAAAGTGAC CTACTCAATT
GAAAAATTTA AACAACATTA TACCGGTATT GCAGTAGAAC TTTTCCCAGC GATAAATTTT
AAAAAAGAAA ACCGTGATAC AGGCCTTAAA CTAAGCCCTT TCTGGCAAGC GAGTGTAGGC
TTAAAAGCGG GCCTATTTAA AATATTTATC GCTTCAGTAT TGTTACAGCT ATTTTCACTC
GCTTCTCCTT ATTATATGCA ACTCGTGATT GATGACGTAA TAGTCAATCA AGACAGTGAG
CTGCTGACGT TATTGTTCAT TGCCTTTTCT ATGCTGGCAC TCGTCTCTCT TGTAACCAGT
ATTTTACGAG ATTTAATTGG TTTACATATA CAGAACCATT TAAATATTCA ATGGAGTTCA
GGGTTATTTT CTCATTTGGT TCGATTACCC ATTAGTTGGT TTGAGAAACG TCATATCGGC
GATATTGTTA GCCGCTTTGG CTCCCAAGGG GAAATTCAGT CATTTATTAC CTCTACGTTT
GTCAGTGTTG TGCTTGATGG CTTAATGGTC ACGACAACCT TGATAATGAT GTACATCTAT
AGTCCAAAAT TGACAATAAT CGCCATTATA GCTGTGTTAA TTTATGCATG TTTGAGATGG
ATATTCTATC GGCCATTTAG AAGAAATGCT GAAGAGGTCA TAACAGCCTC AGCTAAGGAA
GACAGCTTTT TCTTAGAGGG TATACGCTCG ATTCAAGCTA TACGTTTACA CGGTCATGAA
GATAAGCGTA AAAACGAATG GTTATCCCTG CATTCTAACG TCGTTAATTT GGGGATCAAA
GGTTCGCTGT GGTCTTTAGG CTTTTCGTCA GTGAATACGA TTGTGTTTGC AATTGAAAAT
ATGTGTGTAA TTTATTTTGC AGCAAACTTT GTGATGGAGG GTGTTTTTTC CATAGGGATG
ATGATGGCTT TTATGTCTTA TAAAGGGCAG TTTTCCTCAA GAATTAATAG CCTTATCGAC
AGTTTTGTTT CGTTTAAAAT GCTCGACATT CACTTATCTA GGCTGTCAGA CATTGCATTA
GAACCCCAAG AGGCCCATCG TAAGGGCTTG GGATTGGCAG AAAATATAGT GGGTTGCATC
ACACTTGAAA ACATCAGCTT TAGATATGGA CTCAAATCCA AAATCTTGTT TGATAATGTT
AATCTCACAC TCAAATTCGG CGATAATATT GCGATAACAG GGGTTTCAGG CAGTGGTAAA
ACCACCTTGC TAAAAATAAT CTTAGGATTA CTAGAGCCTA CCTCAGGAAG AATACTTTTT
GATGGGGTAG ATATCAAAAA AATTGGCTTA GTGCAGTACA GAAAACTGAT TGGTAGCGTT
ATGCAAAATG ATTCGTTGTT ATCGGGCACT TTAGCCGACA ATATTTCGTT TTTTGATGAA
GCCTACAACC CCTTGAAAAT TGAGCAGTCA TGTAAATTAG CGTCAATACA TGATGATATA
GAAGCCTTAC CCATGGGATA TCAAACACTC ATTGGCGATA TGGGCGTTCA GTTGTCTGGT
GGCCAAGTAC AACGTGTATT ACTGGCCAGG GCCTTATACC TTGAACCCTG CGTACTAGTA
TTGGATGAAG CAACCAGTAA TTTAGATATA GACAATGAAC AGCGCATTAA TTCAGGTATT
AGTAGCCTTC CAGTGACTAG GATCCTTGTG ACTCATAGAC AATCAACCTT GGAGTACGTG
GATAAAGTGT ATAACCTAAC GACCCAAGGG CTTGAACCTG TTTCATAA
|
|---|
| Protein sequence | MFALFPQKKC PFIFQSENSE CGLACLAMIS SFYQRKTDLM TLRKQLGYSE SGMSVRTLCE
YAEQINLDSR PLQVDVHEID QLRLPCVLHW DLNHFVVLTQ CSKKSVTIHD PAIGKVTYSI
EKFKQHYTGI AVELFPAINF KKENRDTGLK LSPFWQASVG LKAGLFKIFI ASVLLQLFSL
ASPYYMQLVI DDVIVNQDSE LLTLLFIAFS MLALVSLVTS ILRDLIGLHI QNHLNIQWSS
GLFSHLVRLP ISWFEKRHIG DIVSRFGSQG EIQSFITSTF VSVVLDGLMV TTTLIMMYIY
SPKLTIIAII AVLIYACLRW IFYRPFRRNA EEVITASAKE DSFFLEGIRS IQAIRLHGHE
DKRKNEWLSL HSNVVNLGIK GSLWSLGFSS VNTIVFAIEN MCVIYFAANF VMEGVFSIGM
MMAFMSYKGQ FSSRINSLID SFVSFKMLDI HLSRLSDIAL EPQEAHRKGL GLAENIVGCI
TLENISFRYG LKSKILFDNV NLTLKFGDNI AITGVSGSGK TTLLKIILGL LEPTSGRILF
DGVDIKKIGL VQYRKLIGSV MQNDSLLSGT LADNISFFDE AYNPLKIEQS CKLASIHDDI
EALPMGYQTL IGDMGVQLSG GQVQRVLLAR ALYLEPCVLV LDEATSNLDI DNEQRINSGI
SSLPVTRILV THRQSTLEYV DKVYNLTTQG LEPVS
|
|---|
| |