| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0470 |
|---|
| Symbol | |
|---|
| ID | 4016653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 539772 |
|---|
| End bp | 541763 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637954456 |
|---|
| Product | TonB-dependent copper receptor |
|---|
| Protein accession | YP_561485 |
|---|
| Protein GI | 91791834 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
|---|
| TIGRFAM ID | [TIGR01778] TonB-dependent copper receptor
[TIGR03304] outer membrane insertion C-terminal signal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAAAGA CCAACTTCAA ATTAAGCTTA TTAGCGGGCG CGTTAGTGAT GGCGATGCAA
CCCAGCGTGC AGGCACAAGA GCAGCACAAT TGCACTAAAG ATGAAAAGTG TAACGATTAC
CTTGTGGTCA CAGGGGATGT GATGCGCGAG CCTGTTAACG TGGTTAGCGA TCCCAAGAAG
CCACGTTTGC CACTGCCCGC ATTTGAAGGT TCAGGTTTTT TGAAAACCAT TCCAGGTTTT
AGTGTGACTC GTAAAGGCGG CATGGGCGGC GACCCCTCAT TTCGCGGTAT GGGAGGATCA
CGTCTTGCGA TAGTCGATGA TGGTCAGCAC GTGTATGGCG CCTGTGGTGG CCGTATGGAC
CCACCCACTA ATTACATATA TCCAGAATCC TATGATGAAA TTACCGTGAT AAAAGGTCCG
CAAACGGTGA AATATGGTCC CGTGGGCTCA GCGGGCACTG TCTTGTTTGA GAAAAATCGC
CATCGCTTTA CCGAACGCGG CATTATTGGC CGCGCCAGCA TCACTGGCGG CAGTTTTGAT
AGAAAAGACA GCATCATTGA ATTTGTGGCG GGTAATGCCG ATTATTATGT CGATTTTGAT
ATGGACAGCT CCAGCAGCGA TCACTACAAG GACGGTAACG ATAATCCAGT GCAATCAAGC
TACGACAGAG ACAATATCAA GGTCGCCTTG GGTTGGACAC CGTCAGAAAA TACTGTGATT
GAATTCGCAA TGGGTCAGTC AGAAGGTGAG GCTGAATATG CGGATCGCCT TAACAAGGCG
CGCCAAATCG ATAACGAAAG TTATACCTTG TTAGTGCAGC ATGATTTCGA TTCAGAGCTA
CTAAAAAATG TTGATTTTCA AGTTTATAGC AATGAAAACG ATCACATCAT GGATCAGTTT
GATCGCGGCG TAAACATGGG CATGGATGTG ATGCGCAGTA CCAGTGGCGG CCATTTCTGG
TTAGGGTTAA CCCCTATGAT GAATTGGGAT CTCACCCTGG GGGTCGATCA TATGCAAAGC
GATCACCAAG GCCGCGGCAT CAATATGATG CAAGATAAAG GCCTGGATGA TTTGCTGCGT
AAGCCGTTTA TGAAGAATAT GGAATACGCC AACTGGGGCT TATTTGTTGA ATCTGTCTAT
CATCTTGACC ACAGCAAGGT ATTTGCTGGT ATGCGTTATG ACAATTGGGA TACCGATCTC
TATGTGGGTC AAAAAGGCAA TCGAGCTGAC GATGTATTTA GCGGTTACGC CCGTTATGAG
TACCGTGATG GTTTCAGCCA ATATTATGCC GGTGTAGGTC ACGCTGAGCG GGTGCCTGAT
TACTGGGAAA TCATGAAAAC CAGTGCCAGC AATCCAATGC AAAAATCCTT TGATCTTGAG
CCTGAAGAAA CCAATCAGCT GGATATCGGC TGGATCTATG ACAATGGCTT AGTGTTTTCA
AGCTCATTAT TCTACGGCAA GTTAGATAAC TACATCTTAG TTGACTCAAC CGGCCCAATG
ACAGTGGCCC GTAATATCGA TGCGACCTTG TACGGCGGTG AAGCCAGCAT AGATTATGAT
GTTAACGAAC ACTTTTCGGC CCAAGTGACC TTAAGCTACA CCTTAGGTGA TAACGACACT
GATAATGTTG ACTTAGGTCA GGTGTCACCG CTTGAGTCTA AATTTTCACT GAACTATCAA
AAAGATGCAT GGGCTGCAGG ACTCTTGTGG CGAGTGGTTG ATTCTCAACA TCGAGTGACA
ATCGGCCATG GCAACATAGT GGGTCAAGAT TTAGCCGAGT CTAGTGGTTT TGGTACAGTT
GCCATCAATG CTTCGTGGAA TTATGACGAC CACTTACGGT TAATTTTAGG GGTAGAGAAC
CTGTTTGATA TTGCTTACGC CGAGCACATC AGTAAAGCGG CGGGTGGCAA TGACTTACCC
GGCAGTGAGC CTATGTTCCA AGTGAACGAA TCAGGCCGTA ACTTCTGGGC TAAATTGACT
TATGAGTTTT AA
|
|---|
| Protein sequence | MGKTNFKLSL LAGALVMAMQ PSVQAQEQHN CTKDEKCNDY LVVTGDVMRE PVNVVSDPKK
PRLPLPAFEG SGFLKTIPGF SVTRKGGMGG DPSFRGMGGS RLAIVDDGQH VYGACGGRMD
PPTNYIYPES YDEITVIKGP QTVKYGPVGS AGTVLFEKNR HRFTERGIIG RASITGGSFD
RKDSIIEFVA GNADYYVDFD MDSSSSDHYK DGNDNPVQSS YDRDNIKVAL GWTPSENTVI
EFAMGQSEGE AEYADRLNKA RQIDNESYTL LVQHDFDSEL LKNVDFQVYS NENDHIMDQF
DRGVNMGMDV MRSTSGGHFW LGLTPMMNWD LTLGVDHMQS DHQGRGINMM QDKGLDDLLR
KPFMKNMEYA NWGLFVESVY HLDHSKVFAG MRYDNWDTDL YVGQKGNRAD DVFSGYARYE
YRDGFSQYYA GVGHAERVPD YWEIMKTSAS NPMQKSFDLE PEETNQLDIG WIYDNGLVFS
SSLFYGKLDN YILVDSTGPM TVARNIDATL YGGEASIDYD VNEHFSAQVT LSYTLGDNDT
DNVDLGQVSP LESKFSLNYQ KDAWAAGLLW RVVDSQHRVT IGHGNIVGQD LAESSGFGTV
AINASWNYDD HLRLILGVEN LFDIAYAEHI SKAAGGNDLP GSEPMFQVNE SGRNFWAKLT
YEF
|
|---|
| |