| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0445 |
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| Symbol | |
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| ID | 4017216 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 515431 |
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| End bp | 516399 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954431 |
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| Product | dihydrouridine synthase TIM-barrel protein nifR3 |
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| Protein accession | YP_561460 |
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| Protein GI | 91791809 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.0000000152787 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAATTG GCCCCTATCA ACTGAAGAAT CAGCTGATCG TGGCACCAAT GGCAGGTGTC
ACAGATCAAG CCTTTCGAAA CCTCTGTTTA CGTTATGGTG CAGCCTTAGC CGTTTCAGAG
ATGCTTTCCT CTAATCCCGA AGTATGGGAC ACAGAGAAAA GCCGCCAGCG CATGACACAC
TCTGGTGAAG AAGGTATACG CTCAGTACAA ATTGCCGGCG CCGATCCTGA TTTAATGGCC
AATGCCGCTC AGTTCAATGT TGAACAAGGC GCGCATATCA TTGATATCAA CATGGGTTGT
CCAGCGAAAA AAGTGAATAA AAAATTTGCA GGCTCAGCAT TGATGCAAGA TCCCGCGCTA
GTAAAAGACA TTTTACAAGC CGTGGTTGCC GCAGTAGATG TGCCTGTCAC CTTAAAAATT
CGCACAGGTT GGGATCCTGA ACACAAGAAT GGTGTTCAAA TCGCCCAGAT TGCCCAAGAT
TGTGGCATTG CCTCCCTCGC CGTTCACGGC AGAACGCGGC AATGTATGTA TAAAGGCTTT
GCCGAGTACG ACACGATAAA AGCAATAAAA CAGAATATCT CTATTCCTGT TGTCGCCAAT
GGAGACATAG ACAGTCCAGA GAAAGCGCGG TTTGTGCTTG ATTACACTGG CGTCGATGCC
CTGATGATAG GACGAGGTGC CCAAGGACGG CCATGGATTT TTAAAGAGAT CCAGCACTAC
TTGGAAACAG GTAAAAAATT AGCGCCCATT GAGATACACG AGCAACGACT TGTCATGCTC
GAGCATCTAA CCAAACTGTA TGAATTGTAT GGCGAATATA AAGGTGTCCG CTTCGCCAGA
AAGCATACGG GATGGTATTT AAACCAAGAG GAACAGCGCC AATTTCGTGC TGACTTCAAT
CGGCTCGAAA GCGCTGACCA GCAATATTCC CTAGTGGAAT GTTATTTTGA TGAATTAGTA
AAAAATTAA
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| Protein sequence | MQIGPYQLKN QLIVAPMAGV TDQAFRNLCL RYGAALAVSE MLSSNPEVWD TEKSRQRMTH
SGEEGIRSVQ IAGADPDLMA NAAQFNVEQG AHIIDINMGC PAKKVNKKFA GSALMQDPAL
VKDILQAVVA AVDVPVTLKI RTGWDPEHKN GVQIAQIAQD CGIASLAVHG RTRQCMYKGF
AEYDTIKAIK QNISIPVVAN GDIDSPEKAR FVLDYTGVDA LMIGRGAQGR PWIFKEIQHY
LETGKKLAPI EIHEQRLVML EHLTKLYELY GEYKGVRFAR KHTGWYLNQE EQRQFRADFN
RLESADQQYS LVECYFDELV KN
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