| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0416 |
|---|
| Symbol | dipZ |
|---|
| ID | 4017838 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | - |
|---|
| Start bp | 487859 |
|---|
| End bp | 489733 |
|---|
| Gene Length | 1875 bp |
|---|
| Protein Length | 624 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 637954403 |
|---|
| Product | thiol:disulfide interchange protein precursor |
|---|
| Protein accession | YP_561432 |
|---|
| Protein GI | 91791781 |
|---|
| COG category | [C] Energy production and conversion
[O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG4232] Thiol:disulfide interchange protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.136243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGA TACTTTCCCT GCTATTATCC AGCCTTATTT TGCTGTCTCC CTTGGCCCAT
AGCGAAAGCT TTGGCCAGAG TAAAAGTTTT TCATTCTTAT CCAGTGAGCC TGTGTTGCTG
CCAGTCAATG AAGCGTTTTC ATTTGACTAT CAACAGCAAG GTAACCAGCT CAAAATTAGC
TGGGTCATCG CCGACGGCTA TTACATGTAT CGCGACAAGC TCAGCTTTAG TATCGAAGGT
GCCAAGCTTA CTGAAGTGGT ATTGCCCCGT GGCAAGATGC ATCTAGATGA CTATTTTGGC
GAGCAGGAAG TCTATTACAG CTTTATCGAA TTCCCATTGG AATTACAGCA AATTGATGCC
AATGCCAACT TGTCGGTCAC CTTTATGGGC TGCGCCGAAG GCAAACTTTG CTACCCCCCC
ACCAAGCGCA TGGTGCCCTT AATCGCATCC GCAGGCGAGG CCGCGTCATC ATCGGCAAGC
CCCGCTGACA AGGCCATCAT AGGTGGCAGT CAACGCGATG CTATTTCGGC AGATAATACG
CCAGCAGCCG AGGCTGTCCA TGTATCGACT CAAGACAGCC TAAGCCAGAT GCTAGCCGGT
GACAGCCTAT TGTGGACCCT AGCCATCTTC TTCGGCTTAG GCATAGGTCT CGCACTCACC
CCCTGCGTAT TCCCCATGTA TCCTATTTTG TCGGGCATTA TTGTCGGTCA GGGCAAGAAA
TTATCCACGG CCAAGGCCTT TACCTTATCC ATGGCCTATG TCCAAGGCAT GGCAATCACT
TACTCTCTCC TTGGATTGGT GGTGGCGTCT GCCGGGCTTA AATATCAAGC CGCATTGCAA
CACCCAGCCA TTCTTATTGT GCTGGCTATC TTGTTTGCAG TATTAAGCTT ATCCATGTTC
GGCCTCTATG ATTTAAAACT GCCGGCCAAA TGGCAGGAGA AGATGAACTC GCTGTCCAAT
AATCAAAAGG GGGGTAACCT CATTGGGGTG TTCTTGATGG GGGTCATATC GGGCCTTGTA
GCCTCCCCTT GCACTACGGC GCCACTCTCG GGGGCACTGA TTTATGTGGC TCAAAGTGGC
GATCTTATGC AAGGGTTCTT AGCCCTGTAT GTGCTCAGTA TGGGCATGGG CATTCCCTTG
CTTATTTTAG GCACATCGGG CGGTAAGATA CTGCCAAGAG CCGGCGCTTG GATGGATATT
ATCAAGACAG TGTTCGGCTT CTTGCTGATT GCCGTGTCTA TCGTGATGCT CAGCCGCATT
TGGGTTGGCG TGGTGTCTGA TGTGCTTTGG TCTGTGTGGG CACTCGCCTT CGTGGGTTAC
CTGATGCATC AGAATAAGCT CAGCGAATTT AACTGGAAAC AAACCGCTCG CAGCATAATG
CTAATCCTAA TGTTGATGGC AAGCTTTTCT TATGGTTTTC AGGCGGTAAT GAATCATTTT
GGTTTCACTA GTCCAAGTCT GGCACAGCAA GCCGCATCCC AAAGCACAGG TATGAAAGCG
GCTAAACATA TTGAGTTCAT TAAGATTAAG TCTCTTGACG ATCTCAATCG CGAGCTTGCC
AAAGCCAGTG CCAATAACCA GACGGCACTG TTAGATCTGT ATGCCGACTG GTGCGTAGCC
TGTAAGGACT TTGAGACCAT TACCTTTAAA GACAGCCAAG TCGAGCAGCG CTTTCAACAG
CTGGTCTTAT TGCAAGCTGA TGTGACCAAA AGCGATGATA TCGATGTCGA GCTGCTAGAA
CATTTTAACG TGCTCGGCTT GCCCACTTTG TTGATGTTTG ATAAAAATGG CCAACAGCGT
GAAGATCTAC GGATAACAGG CTTTTTAGGC CCTAAAGACT TCGTTAAGCA GCTAGATTTA
CTGATAAACA AATAA
|
|---|
| Protein sequence | MNKILSLLLS SLILLSPLAH SESFGQSKSF SFLSSEPVLL PVNEAFSFDY QQQGNQLKIS
WVIADGYYMY RDKLSFSIEG AKLTEVVLPR GKMHLDDYFG EQEVYYSFIE FPLELQQIDA
NANLSVTFMG CAEGKLCYPP TKRMVPLIAS AGEAASSSAS PADKAIIGGS QRDAISADNT
PAAEAVHVST QDSLSQMLAG DSLLWTLAIF FGLGIGLALT PCVFPMYPIL SGIIVGQGKK
LSTAKAFTLS MAYVQGMAIT YSLLGLVVAS AGLKYQAALQ HPAILIVLAI LFAVLSLSMF
GLYDLKLPAK WQEKMNSLSN NQKGGNLIGV FLMGVISGLV ASPCTTAPLS GALIYVAQSG
DLMQGFLALY VLSMGMGIPL LILGTSGGKI LPRAGAWMDI IKTVFGFLLI AVSIVMLSRI
WVGVVSDVLW SVWALAFVGY LMHQNKLSEF NWKQTARSIM LILMLMASFS YGFQAVMNHF
GFTSPSLAQQ AASQSTGMKA AKHIEFIKIK SLDDLNRELA KASANNQTAL LDLYADWCVA
CKDFETITFK DSQVEQRFQQ LVLLQADVTK SDDIDVELLE HFNVLGLPTL LMFDKNGQQR
EDLRITGFLG PKDFVKQLDL LINK
|
|---|
| |