| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0407 |
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| Symbol | |
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| ID | 4017153 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 473596 |
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| End bp | 476217 |
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| Gene Length | 2622 bp |
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| Protein Length | 873 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637954390 |
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| Product | GGDEF domain-containing protein |
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| Protein accession | YP_561423 |
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| Protein GI | 91791772 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0669941 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGTCG CTCCCTCCTT TATATCTTCC GATATCGAGC ACTTGCAAAA AAGAGTCATT
CGACTAAAGC GCTTGGCGAG GAAATATAAA CGGGCTGAGA TCATTCAAAA TGCATTATTG
GAAATTTCCA ATATTGCCAC AAAAGCCGCG TCCTTAGATT TATTTTATCA AGGTGTGCAT
CTGCACCTAA AAAAACTCAT CCCAGCAGAT AACTTCTTTA TTGCTAGTCG AGATGCCAAC
ACAGGCCTCA TTAGTTTGCC TTTTTTTGCC GATGAAAAAG ACCCTCATCC CAGTGAACTT
TATCCTGATG AGGAGATTTC GTCCATCATT GAACGTGGCA TTACAGGGTA TGTCCTTAAA
ACCGGGAAAC CACTGCTTTG TGACACCAAT AAATTTGATG AACTTATTGC CACTGGTGCC
ATCGATGATT TAGGCTCTCC TAGCCATCAA TGGCTAGGCG TTCCCATTAA GCGAAACCAT
CACAGTATAG GGGTATTGGT GGTACAAAGT TACCATCCTG ATATCACCTA TGGCGAATTA
GAGCTCGAGC TAATGGGCTT TATTTGCCAT CATATTTCTG GTGTCATGGA GCGCCTGAAA
CATCATGAGC AACTCGAGCA AGCCATTGTA GAGCGCACCA AAGAACTCAG CCATGCCTAC
GAAACAGTAA AACAAGAAGT CAAAGAGCGT GTTAGAGCCG AACGACTACA AAAAGCCTTA
TTTGAAATAG CCGATTTGTC AGCGTCTAAT GCGGACCAGA ATCGATTCTA TGTGCAACTC
CATCAAATTA TTAGTCAACT GATCCCGGCA CAAAACTGTT TTATCGCTTT GATCAATAAT
GTAGATGCGA CGCTATCCTT CCCTTTCTAC GTATCCCAAA TGAATTTAAG TTATCCCGCA
TCGAGACCCA TGCAAGATGG TTTAACAGAG TACATTCTAG CCACAAAAGA ACCTAAGCTT
CTGAGTCAAA ACGATATTAA GACATTAATA GAACAAGATG AAATCTACGC TATTGCACCT
GCTTTGAACC AAACTCATGC CATGCATCAA TGGATAGGCA TCCCTTTATT CATTCACGGT
AACATAGCCG GTGCATTAAC CATTTACAGC ATAAGCCAAG ATCAAAACTA TCAAGTCAAA
GATCTCGAAC TATTGAACTT TGTCTCCCAT CACATCGCCA ATGCCATAGA ACGAAAGATG
GCAGTTGAGA GCTTAAAGCG CAGTCACGAT GAGCTAGAGG ATAAGGTAAG CCAACGAACC
CAAGCATTGG CGGAATTGAA TGACAATTTG CAAGAAGAAA TCATGCAAAG ACGTAAGATT
GAAGCTCAGC TGCAACATGA TGCCAAGCAC GATGGCTTAA CGGGCCTGCC AAATCGTAGC
TTCTTTATGG AGCGCTTATC TTATGCCATC AAGCACGGTC GCAGACATGG ACATGATCAA
TTTGCACTCT TGTTTATCGA TTTAGACAGA TTTAAACAAA TCAACGATAC CTTTGGTCAC
CTCGAAGGGG ATAAGTTTTT AATCGAAACT GCTAGACGCT TAAAATCCTG CATTCGAGAA
AACGATGCCT TAGCTCGCTT AGGTGGTGAT GAATTTGTGA TTTTGCTCGA TAGCATACAA
GGCACCCAAG ATGCACTGGA TGTTAGTGAT CGCATCTTGT ATCAGGTGTC ACAGCCCTAT
AAATTAGGCA AGCAAGATTT TATCTCAGGC GCCAGTATCG GCATCGCCTT TAGTGGTCAT
CATAAAGAGG ATACCAGCGA ATCCTTACTT AAATCCGCCG ATGCAGCCAT GTATCAGGCT
AAATCTAAAG GCAAGGGCTG TTATGTCATA TTTGATAGTC AAATCGATAA ACAGGCAAAA
CAAGCCGCCG AGATGAAAAA AGCCTTTAAA CGGGCACTTT TACAACAAGA AATCAATATC
AGCTACGCCC CTGTGATGAA TTTCAATGAT TTATCTATCA TCGCCTTAGA GCCACAAGCC
TCTTGGAAGC ATCCTGATGG CAGCCTTAAA ACCCACAATC AGCTTAAATC TCTGGCTGAA
CAGTGCCAGT TGATCATTCA TTTCGATGCC TATATTTTCG ATCATCTGAA CCATAATTAC
AGCAAATTAG TGCAGCAATT TAGCAATAAG ATTTGTATCC ATTTGTCCGT TTCAAGCCAG
CATATTAAAC ATAAGCACGG CCTTAGAAAC CTAAAGCGTA CCCTTAAAAA GAGTCAGTTA
GATCTCAGTA GCATCTGGGT GTTTTTCCAC GAAAAGGCCT TCGTGCAAGA CACTGAAAAC
CACATCAGTG CCTTTCAGCA TTTATCGCAG ATGGATGTGA ATATCGGTAT GAATGGCTAT
GGCACGGGTT ACAGTTCACT GAGCAGCTTA AGTTTATTAC CCATCAGCGC ACTAAAACTC
GACAGTAACA TCAGCAAGCA CTTAGTCAAT GAACAGCAGA TGCAGCTCAC TAAGGCCTAT
CAATTAGCGG CAAGCTCGTT AGGTGTCGAT ATGTTTGTTG AGGGGGTGGA TACAGTGCAG
CAAAAACGCC AACTCAGCCA GTTAGGTTAC CAGCAAGGCC AAGGTAAGAC CTTCGAGAAA
AAACACCTTA ATTACATTAA AGTACAAAAA AGCTGCGCTT AA
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| Protein sequence | MDVAPSFISS DIEHLQKRVI RLKRLARKYK RAEIIQNALL EISNIATKAA SLDLFYQGVH
LHLKKLIPAD NFFIASRDAN TGLISLPFFA DEKDPHPSEL YPDEEISSII ERGITGYVLK
TGKPLLCDTN KFDELIATGA IDDLGSPSHQ WLGVPIKRNH HSIGVLVVQS YHPDITYGEL
ELELMGFICH HISGVMERLK HHEQLEQAIV ERTKELSHAY ETVKQEVKER VRAERLQKAL
FEIADLSASN ADQNRFYVQL HQIISQLIPA QNCFIALINN VDATLSFPFY VSQMNLSYPA
SRPMQDGLTE YILATKEPKL LSQNDIKTLI EQDEIYAIAP ALNQTHAMHQ WIGIPLFIHG
NIAGALTIYS ISQDQNYQVK DLELLNFVSH HIANAIERKM AVESLKRSHD ELEDKVSQRT
QALAELNDNL QEEIMQRRKI EAQLQHDAKH DGLTGLPNRS FFMERLSYAI KHGRRHGHDQ
FALLFIDLDR FKQINDTFGH LEGDKFLIET ARRLKSCIRE NDALARLGGD EFVILLDSIQ
GTQDALDVSD RILYQVSQPY KLGKQDFISG ASIGIAFSGH HKEDTSESLL KSADAAMYQA
KSKGKGCYVI FDSQIDKQAK QAAEMKKAFK RALLQQEINI SYAPVMNFND LSIIALEPQA
SWKHPDGSLK THNQLKSLAE QCQLIIHFDA YIFDHLNHNY SKLVQQFSNK ICIHLSVSSQ
HIKHKHGLRN LKRTLKKSQL DLSSIWVFFH EKAFVQDTEN HISAFQHLSQ MDVNIGMNGY
GTGYSSLSSL SLLPISALKL DSNISKHLVN EQQMQLTKAY QLAASSLGVD MFVEGVDTVQ
QKRQLSQLGY QQGQGKTFEK KHLNYIKVQK SCA
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