Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0351 |
Symbol | |
ID | 4017874 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 391611 |
End bp | 392984 |
Gene Length | 1374 bp |
Protein Length | 457 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637954332 |
Product | UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase |
Protein accession | YP_561369 |
Protein GI | 91791718 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0770] UDP-N-acetylmuramyl pentapeptide synthase |
TIGRFAM ID | [TIGR01143] UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATCGAAT TAACCTTGGA CGCATTAGCC CAAAAGTTAA ATGCCAAGCA CCTTGGAGAA AACCTCACCA TAGCCAATGT GAGCACAGAC AGCCGCGCAA TACCCGCAGC CTGTTTATTT GTGGCACTCA AAGGTGAGCG TTTCGATGCC CATGATTTTG CCGCCACGGC CATAGAAAAT GGTGCCAAGG CCTTGTTGGT GGAGCGCGAG CTTGCGCTGG ATATTCCTCA GCTCATAGTG GCAAATAGCC AAAAAGCCAT GGGTGAAATC GGCGCGCTAG TGCGAGATAT TGTCTCGCCA ATATGCGTGG CGCTGACCGG CTCAAACGGT AAGACAAGTG TAAAAGAAAT GCTTGCCAGT ATTTTATCTC AAGGGCATCA AGTGCTTTAC ACCGCCGGTA ATTTTAATAA TGAAATCGGT GTGCCGTTAA CCTTATTGCG ATTAAGCCAA GCTGATGAAT ACGGAGTATT TGAGCTGGGA GCTAATCACA AGGGCGAAAT CGATTACACC TCTTCATTAG TGCGCCCGAG AGTCGCCTTA GTGAACAACA TTGGCAGTGC TCATTTAGAA GGCTTTGGCT CCATAGAAGG GATAGCCGAG GCTAAGTCTG AGATATTTAA TCACCTAAGT GCCGATGGTG TAGCAGTCAT TAATGCCGAT GATGCATTTT GTGAGCTAAT GAAAACCAAG GCCAAGGCGT TTAAGCAGTT GAGTTTTTCC CGTGAAGCTA ATACTAACGC AGACATTCAA GCCACTGGGC TTAACATGAA TGCTGCGGGC TGCTATGGCT TTACTATTCA CTATCAAGGG CAGCAGTTGG CTGTGCAATT GCCTTTGGCC GGTATTCATC AGGTCAGTAA TGCACTGGCA GCCAGTGCCA TGTGTTTAGC CTTAGGCATT AGCTTAACTG ACATCGTTAG TGGCCTGGCA AGGCTTGCAC CAGTGAAAGG CCGGATGCAG CCTCATACCT TAGGGCGCCT GCTGGTCATA GATGACAGTT ATAACGCTAA CCCTAGTTCT GTCAGCGCCG CCATCGACTG GCTTAAAAAT CGTGACGGTT TTTGTTGTTT AGTGCTGGGA GATTTGGGCG AATTAGGCGA CAATGCGGCC CATTTACATG CACAAGTCGG CCAACAAGCA AAAGAGGCAC AAATCGATGC GCTATTTTGC TGTGGCAGCT TGAGTGAAAA TACCAGTTTA GCCTTTGGCA GCCCGCATTA TGCTGAGCTG CCTGCTTTGC TTGTGGAATT AACCTCGGCG ATTAAGGCCA ATCGCGGCGC TGTGACTGTG TTAGTCAAGG GCTCTCGCAG TGCGCGCATG GAAAGAGTGG TAGAGAATTT ATTAAATGCT TACGAGCATG GGGAGTTAGC GTAG
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Protein sequence | MIELTLDALA QKLNAKHLGE NLTIANVSTD SRAIPAACLF VALKGERFDA HDFAATAIEN GAKALLVERE LALDIPQLIV ANSQKAMGEI GALVRDIVSP ICVALTGSNG KTSVKEMLAS ILSQGHQVLY TAGNFNNEIG VPLTLLRLSQ ADEYGVFELG ANHKGEIDYT SSLVRPRVAL VNNIGSAHLE GFGSIEGIAE AKSEIFNHLS ADGVAVINAD DAFCELMKTK AKAFKQLSFS REANTNADIQ ATGLNMNAAG CYGFTIHYQG QQLAVQLPLA GIHQVSNALA ASAMCLALGI SLTDIVSGLA RLAPVKGRMQ PHTLGRLLVI DDSYNANPSS VSAAIDWLKN RDGFCCLVLG DLGELGDNAA HLHAQVGQQA KEAQIDALFC CGSLSENTSL AFGSPHYAEL PALLVELTSA IKANRGAVTV LVKGSRSARM ERVVENLLNA YEHGELA
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