Gene Sden_0323 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0323 
SymbolslmA 
ID4020436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand- 
Start bp362232 
End bp362825 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content47% 
IMG OID637954304 
Productnucleoid occlusion protein 
Protein accessionYP_561341 
Protein GI91791690 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones5 
Plasmid unclonability p-value0.000000549659 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCACTA GCCCAAAAAT AAATCGCCGC GAACACATTT TACAGTGTCT GGCACAAATG 
CTGGAAACCA GCCCAGGTCA AAGGATCACT ACCGCTAAGC TTGCCGCTGA AGTGGGTGTT 
TCTGAAGCGG CCTTATACCG GCATTTCCCC AGCAAGGCAC GGATGTTCGA AGGATTAATC 
GAGTTTATCG AAGACGCTAT TTTATCGCGG CTTAATCTCA TCATGGATGA AGAGAAAGAT 
ACCATGATGC GCTGCCAATT AGTGCTGCAG TTATTACTGG TATTCTCTGA GCGTAACCCT 
GGCATTTCAC GGGTACTTAA TGGCGATGCC CTCTTAGGTG AAAACGAAAG GCTACGCAGT 
CGCATCAGTG TGCTGTTTGC CAAAATTGAA ACTCAGCTTA AGCAAATACT GCGGGAAAAA 
ACCTTAAGAG AAGGCCAAGG CTTTAACCTT GACGAAGCCA TCTTAGCAAA CCTGCTGTTA 
GCGGTTGCCG AAGGCCGCAT CGCTCAGTTT GTCCGCAGCG AATTTAAGCA AAAACCCACA 
CTGCACTTCG ATGAGCAATG GACCTTCATT CAGCAACAAC TGCTTAGAAG TTAA
 
Protein sequence
MATSPKINRR EHILQCLAQM LETSPGQRIT TAKLAAEVGV SEAALYRHFP SKARMFEGLI 
EFIEDAILSR LNLIMDEEKD TMMRCQLVLQ LLLVFSERNP GISRVLNGDA LLGENERLRS 
RISVLFAKIE TQLKQILREK TLREGQGFNL DEAILANLLL AVAEGRIAQF VRSEFKQKPT 
LHFDEQWTFI QQQLLRS