| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0260 |
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| Symbol | |
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| ID | 4020371 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 297804 |
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| End bp | 299855 |
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| Gene Length | 2052 bp |
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| Protein Length | 683 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 637954242 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_561279 |
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| Protein GI | 91791628 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0149994 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAT CTTCTGCCGC GATAACGACA GTAAAAAAGA GTCAATCAGT GATGAAATAT
CTATTCGCCA TAATCTTAAG TATTGGCATC TTACCTAATG CGCTGGCCGC AAACCGACTA
ATGGATGTGA AATATCATTC GCTTGTGGAT CACCAATTAG AATTAGAACT GGTATTTGAG
TCAGACATAA TGTCACCGCA AGTGGATTTA TCTGCCGAAC CCGCGCAGAT CATGCTCAAC
TTTGCCGATA CAGTGTCAGA ATTATCTAGT GATAAAGTAG TCATCAACAG TGTTGGGGTT
GACTCTTTAA TCACAGAGCA AGATGATTCG GCATTGAGAG TGACTCTAAA CTTAAACAGC
GTTAAGCCTT ATCAAGGCAA GATAGTCGGT AATAGCTATC GTTTGACGAT TAATGATGCC
CAAGCTGGCC CTCAACAAGC TGATGATCCT TTCGTTAATG CCGTGAGTAA TATTGATTTT
CGCCGTAGCA AAACCGGCGG TGGTCAATTA TCTATCCAAT TAAATAATCG CTCTGTTGCG
GCAAATGTTG AGCAAGTGGG TTCAAAGCTT GAAATCAAAC TGTATAACAC AGACATAAAA
TCAGAGTTGC TTTATGTGAT GGACGTGCAG GACTTTGCGA CGCCAGTGGT CAGTTTTGAA
ACCTTTAAAG ATGATTTAAC CACGCGTATT ATTGTCGATG TTGATGGTAA TTATGACTAT
GACTACCGCC AAGAAGGCAA TGTGTTTAAA ATCGATATCG ACAAAGTCGA GCGGATATCC
ATAGCTAAAG AAGATAAAAA ATACAGCGGT AAAACATTAT CGCTAAATTT TCAAAATATT
TCTGTGCGCA CGGTATTACA GATCATTGCC GATTATAACA ACTTCAATTT AGTCACTAGC
GATACGGTCG AAGGCAACAT TACTCTGCGT CTAGATGATG TGCCTTGGGA TCAAGCCTTA
GATCTTATCT TACAAGCCAA GGGGCTGGAT AAGCGCATCG AAGGTAACAT CCTTATGGTG
GCGCCAAGCG AAGAATTAGC CATTCGTGAA AGCCAAGATT TAAAGAACAA ACAAGAAGTG
AAAGAGCTAG CACCACTATA CTCTGAGTTT TTACAAATTA ACTACGCCAA AGCCATAGAC
ATTGCCGAGC TGCTTAAGAG TGAAGACTCT AGCCTGTTAT CCACTCGGGG TAGCGTTGCG
GTTGATCAAA GAACCAATAC CTTGCTGGTC AAAGACACTG CTGACATCAT AGATAATATT
CACCGCCTTA TTGAAGTGCT GGATATTCCG ATCAAGCAGG TATTGATTGA ATCACGCATG
GTCACAGTTA AAGACGATGT CTCAGAAGAC TTAGGCATAC GTTGGGGCAT AACGGATCAA
CAAGGTACTA AGGGAACATC AGGATCGTTA ACCGGCTCGC AGAACATTGC TAATGGGGTT
GTGCCTAGCA TTGATGACAG GTTAAATGTC AATTTACCTG CCGCCGCGAG CAACCACACC
AGCATAGCCT TTCATGTGGC CAAATTAGCT GACGGCACCA TTCTCGATTT AGAGTTAAGC
GCCTTAGAGC AGGAGAATAA AGGTGAAATT ATTGCCAGCC CAAGAATCAC CACGTCAAAT
CAGAAGGCCG CTTACATTGA GCAAGGTGTT GAAATTCCGT ATGTGCAGTC CACATCCAGT
GGTGCTACAT CTGTGACCTT TAAGAAAGCC GTGTTGTCAC TGCGGGTAAC CCCGCAAATT
ACTCCAGACA ATCGAGTGAT CCTAGATCTT GAAATTACCC AAGACTCACA GGGTAAAACC
GTTGATACCC CAACGGGGCC TGCCGTGGCT ATCGACACCC AACGTATTGG CACTCAAGTC
TTGGTTGATA ACGGCGAAAC CATAGTGTTA GGTGGTATTT ATCAACAGAA CCTCATTAGC
CGCGTCAGCA AGGTGCCAAT TTTAGGTGAT ATTCCTTATG TTGGCTTCTT GTTTAGGAAT
ACCACGGACA AAAATGAGCG CCAAGAGCTG CTGATTTTCG TGACACCTAA GATAGTGACA
GAAAAGCTGT AA
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| Protein sequence | MMKSSAAITT VKKSQSVMKY LFAIILSIGI LPNALAANRL MDVKYHSLVD HQLELELVFE
SDIMSPQVDL SAEPAQIMLN FADTVSELSS DKVVINSVGV DSLITEQDDS ALRVTLNLNS
VKPYQGKIVG NSYRLTINDA QAGPQQADDP FVNAVSNIDF RRSKTGGGQL SIQLNNRSVA
ANVEQVGSKL EIKLYNTDIK SELLYVMDVQ DFATPVVSFE TFKDDLTTRI IVDVDGNYDY
DYRQEGNVFK IDIDKVERIS IAKEDKKYSG KTLSLNFQNI SVRTVLQIIA DYNNFNLVTS
DTVEGNITLR LDDVPWDQAL DLILQAKGLD KRIEGNILMV APSEELAIRE SQDLKNKQEV
KELAPLYSEF LQINYAKAID IAELLKSEDS SLLSTRGSVA VDQRTNTLLV KDTADIIDNI
HRLIEVLDIP IKQVLIESRM VTVKDDVSED LGIRWGITDQ QGTKGTSGSL TGSQNIANGV
VPSIDDRLNV NLPAAASNHT SIAFHVAKLA DGTILDLELS ALEQENKGEI IASPRITTSN
QKAAYIEQGV EIPYVQSTSS GATSVTFKKA VLSLRVTPQI TPDNRVILDL EITQDSQGKT
VDTPTGPAVA IDTQRIGTQV LVDNGETIVL GGIYQQNLIS RVSKVPILGD IPYVGFLFRN
TTDKNERQEL LIFVTPKIVT EKL
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