| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0231 |
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| Symbol | |
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| ID | 4017951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 257337 |
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| End bp | 258434 |
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| Gene Length | 1098 bp |
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| Protein Length | 365 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 637954207 |
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| Product | tRNA (uracil-5-)-methyltransferase |
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| Protein accession | YP_561251 |
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| Protein GI | 91791600 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
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| TIGRFAM ID | [TIGR02143] tRNA (uracil-5-)-methyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000000344298 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTAG CCGCTATGGA TCCCAGTAAT TACGACGCAC AGTTAGCCGA GAAAAAGCGC
AAGCTGTCTG AGGGTTTTGC CGAATTCGCC CCTCCTGAGC TTGAGGTTTT TGCCTCAGAA
CCTGCCCACT ATAGAATGCG CGCTGAATTT CGCGTTTGGC ATGAAGGCGA TGACCTGTAC
TACTATATGT TTGATAAAGT GTTAGACGCT AAAGTCCGCT GCGAGCAATA CCTGCCAGCC
TCAACACTCA TCAATGCCAT CATGACCAGT TTAGTTGAAG AACTTAGGCC GAATCACAGT
CTGCGTCACA GATTATTCCA AGTGGATTTT TTATCTACCT TAAGCGGTGA AATCTTAGTG
TCTTTGCTTT ATCACCGTCA GCTTGATGAA CAATGGCAAG TTGAAGCCGC AGCATTGAAA
CAGCGTCTCT CTAGCCAGTT TAATGTCAAT ATTATTGGTC GAGCCCGTAA ACAGAAAATC
GATCTCGATA AAGATTTCGT CGTTGAAACC ATTAAGGTCA ACGGCCAAGA TTTGCATTAC
AAGCAAATTG AAAACAGCTT TACTCAGCCT AATGCTAAAG TGTCGATAAA AATGCTCGAG
TGGGCCATCG ATGCCACCAA ACAAAGCCAA GGTGATTTGC TGGAACTTTA CTGCGGCAAT
GGTAACTTCA CTATTGCACT GGCGCAGAAT TTTAATCGCG TATTAGCCAC CGAGCTCGCT
AAACCTTCTG TGGGTGCCGC CCAGTACAAT ATCGCCATTA ATAATGTCGA TAATGTGCAG
ATCATTCGCA TGTCAGCTGA GGACTTTAGC GATGCTATGG CCAAGAAGCG CAGCTTTAGG
CGCTTAGAAG GCATAGATTT AGACAGTTAT AACTGCAATA CCATTTTTGT CGACCCGCCA
AGAGCCGGCA TTGATGATGA AACCCTAAAG TTAATCCAAG GTTATGAGCG TATCTTGTAC
ATTTCATGTA ACCCTGAAAC CCTCAAAGAT AACTTACAAA CCTTAAGTTC AAGCCATAAG
ATCACCCGTT TTGCACTGTT TGATCAATTT CCTTATACCC ATCACATGGA ATCCGGTGTG
CTGTTAGAAC GTAAATAA
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| Protein sequence | MNLAAMDPSN YDAQLAEKKR KLSEGFAEFA PPELEVFASE PAHYRMRAEF RVWHEGDDLY
YYMFDKVLDA KVRCEQYLPA STLINAIMTS LVEELRPNHS LRHRLFQVDF LSTLSGEILV
SLLYHRQLDE QWQVEAAALK QRLSSQFNVN IIGRARKQKI DLDKDFVVET IKVNGQDLHY
KQIENSFTQP NAKVSIKMLE WAIDATKQSQ GDLLELYCGN GNFTIALAQN FNRVLATELA
KPSVGAAQYN IAINNVDNVQ IIRMSAEDFS DAMAKKRSFR RLEGIDLDSY NCNTIFVDPP
RAGIDDETLK LIQGYERILY ISCNPETLKD NLQTLSSSHK ITRFALFDQF PYTHHMESGV
LLERK
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