Gene Sden_0194 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0194 
SymbolrpsD 
ID4017914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp207859 
End bp208479 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content45% 
IMG OID637954170 
Product30S ribosomal protein S4 
Protein accessionYP_561214 
Protein GI91791563 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0522] Ribosomal protein S4 and related proteins 
TIGRFAM ID[TIGR01017] ribosomal protein S4, bacterial/organelle type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000127646 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC 
CTAAAAAGCG GTGTGAGAGC AATCGATTCG AAGTGTAAGC TGGAAACTGC ACCTGGACAA
CATGGCGCAC GTAAGCCACG TTTGTCTGAG TATGGTACTC AGTTACGCGA GAAACAAAAA
GTTCGTCGTA TTTATGGTGT GCTTGAAAAG CAATTCCGTA ACTACTACAA AGAAGCTGCA
CGCCTAAAAG GCAATACAGG TGAAAACTTG TTGCAACTTT TAGAAACACG CCTAGATAAC
GTTGTTTATC GTATGGGCTT TGGTGCGACT CGTGCAGAAT CACGTCAGCT AGTTAGCCAC
AAAACTGTGT TGGTTAACGG CCGTGTTGTT AACATACCGT CGTTCAAAGT GTCTGCGAAT
GATGTTGTAA GCATCCGCGA AAAGTCACGC ACTCAAGCAC GTATTAAAGC GTCTTTAGAA
GTGGCAGCTC AACGCGAGAA GCCTACATGG GTTGAAGTAG ATAACACTAA GATGGAAGGT
GCTTTCAAGC GTCTACCAGA ACGTAGTGAT TTGTCTGCGG ATATTAACGA ACAGCTGATC
GTCGAGCTTT ACTCTAAGTA A
 
Protein sequence
MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGTQLREKQK 
VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH
KTVLVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKASLE VAAQREKPTW VEVDNTKMEG
AFKRLPERSD LSADINEQLI VELYSK