Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0194 |
Symbol | rpsD |
ID | 4017914 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 207859 |
End bp | 208479 |
Gene Length | 621 bp |
Protein Length | 206 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637954170 |
Product | 30S ribosomal protein S4 |
Protein accession | YP_561214 |
Protein GI | 91791563 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0522] Ribosomal protein S4 and related proteins |
TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0000000127646 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCAAGAT ACTTGGGTCC CAAGCTCAAG CTCAGCCGCA GAGAAGGTAC AGACCTTTTC CTAAAAAGCG GTGTGAGAGC AATCGATTCG AAGTGTAAGC TGGAAACTGC ACCTGGACAA CATGGCGCAC GTAAGCCACG TTTGTCTGAG TATGGTACTC AGTTACGCGA GAAACAAAAA GTTCGTCGTA TTTATGGTGT GCTTGAAAAG CAATTCCGTA ACTACTACAA AGAAGCTGCA CGCCTAAAAG GCAATACAGG TGAAAACTTG TTGCAACTTT TAGAAACACG CCTAGATAAC GTTGTTTATC GTATGGGCTT TGGTGCGACT CGTGCAGAAT CACGTCAGCT AGTTAGCCAC AAAACTGTGT TGGTTAACGG CCGTGTTGTT AACATACCGT CGTTCAAAGT GTCTGCGAAT GATGTTGTAA GCATCCGCGA AAAGTCACGC ACTCAAGCAC GTATTAAAGC GTCTTTAGAA GTGGCAGCTC AACGCGAGAA GCCTACATGG GTTGAAGTAG ATAACACTAA GATGGAAGGT GCTTTCAAGC GTCTACCAGA ACGTAGTGAT TTGTCTGCGG ATATTAACGA ACAGCTGATC GTCGAGCTTT ACTCTAAGTA A
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Protein sequence | MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKLETAPGQ HGARKPRLSE YGTQLREKQK VRRIYGVLEK QFRNYYKEAA RLKGNTGENL LQLLETRLDN VVYRMGFGAT RAESRQLVSH KTVLVNGRVV NIPSFKVSAN DVVSIREKSR TQARIKASLE VAAQREKPTW VEVDNTKMEG AFKRLPERSD LSADINEQLI VELYSK
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