Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0187 |
Symbol | rpsE |
ID | 4017907 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 204331 |
End bp | 204834 |
Gene Length | 504 bp |
Protein Length | 167 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637954163 |
Product | 30S ribosomal protein S5 |
Protein accession | YP_561207 |
Protein GI | 91791556 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0098] Ribosomal protein S5 |
TIGRFAM ID | [TIGR01021] ribosomal protein S5, bacterial/organelle type |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.00000000820766 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTAAAT TAGAAGCTCA GCAAAAAGAC GATCTGCAAG AGAAATTGAT TGCAGTTAAT CGTGTTTCTA AAGTAGTTAA AGGCGGTCGT ATCTTTAGCT TCACTGCACT AACAGTAGTG GGTGACGGTA ACGGTAAGAT CGGCTATGGC TATGGTAAAG CGCGTGAAGT TCCAGCTGCT ATTCAAAAAG CAATGGAAAA AGCCCGTCGT AATATGGTAA CAGTGGAGTT GAATGCAGGT ACTTTGCATC ACCCAGTTAA AGGTCGCCAT ACTGGTTCTA AAGTTTATAT GCAACCAGCA TCACAGGGTA CCGGTATTAT TGCCGGTGGC GCAATGCGTG CCGTATTGGA AGTAGCAGGC GTTCATAACG TTCTGTCAAA AGCATACGGT TCTACTAACC CGATCAACAT CGTTCGCGCT ACTGTCGATG CGTTGGTGCA CATGAAGTCA CCAGCTCAAA TCGCAGCCAA GCGTGGCCTG AATGTTGATG AAATTCGGGG GTAA
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Protein sequence | MAKLEAQQKD DLQEKLIAVN RVSKVVKGGR IFSFTALTVV GDGNGKIGYG YGKAREVPAA IQKAMEKARR NMVTVELNAG TLHHPVKGRH TGSKVYMQPA SQGTGIIAGG AMRAVLEVAG VHNVLSKAYG STNPINIVRA TVDALVHMKS PAQIAAKRGL NVDEIRG
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