Gene Sden_0185 details

Gene Information

• Locus tag: Sden_0185
• Symbol: rplF
• ID: 4017905
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 203425
• End bp: 203958
• Gene Length: 534 bp
• Protein Length: 177 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 637954161
• Product: 50S ribosomal protein L6
• Protein accession: YP_561205
• Protein GI: 91791554
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0097] Ribosomal protein L6P/L9E
• TIGRFAM ID: [TIGR03654] ribosomal protein L6, bacterial type

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.00000000922994
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTCGTG TTGCAAAAGC ACCAGTCACT ATTCCTGCAG GCGTAGAGGT GACTTTAAAC 
GAACAGACAC TTACCGTCAA AGGCAGTAAG GGTAGTCTGA CTCGAGTAAT CAACAGTGCG 
GTAAATGTTG TTATCGAAGA TGCACAAGTT AAGTTTCTTC CTGTCGAAGG CGTCGATGGC 
GCTTGGGCAC AGGCTGGTAC TGCACGTGCA CTAGTAAACA ACATGGTTGT TGGTGTTTCA 
CAAGGTTTTG TGAAGAAACT GAAATTAGTA GGTGTTGGTT ACCGTGCGAA AATCGCTGGT 
AGTGACTTAG ACCTAACATT AGGTTTCTCA CATCCGTTGG TACACAAACT CCCCGCTGGC 
GTCACTGCAG AGTGTCCTAG CCAAACTGAA ATCGTGCTTT CGGGCGTTGA TAAACAGTTA 
ATTGGTCAGG TTGCTGCTGA GATTCGCGGA TATCGTCCAC CAGAGCCGTA CAAAGGCAAA 
GGTGTTCGCT ATGACGACGA AGTAGTACGC CGTAAAGAGG CTAAGAAGAA GTAG 

 

Protein sequence

MSRVAKAPVT IPAGVEVTLN EQTLTVKGSK GSLTRVINSA VNVVIEDAQV KFLPVEGVDG 
AWAQAGTARA LVNNMVVGVS QGFVKKLKLV GVGYRAKIAG SDLDLTLGFS HPLVHKLPAG 
VTAECPSQTE IVLSGVDKQL IGQVAAEIRG YRPPEPYKGK GVRYDDEVVR RKEAKKK