| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0176 |
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| Symbol | rpsC |
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| ID | 4017858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 199704 |
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| End bp | 200393 |
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| Gene Length | 690 bp |
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| Protein Length | 229 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954152 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_561196 |
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| Protein GI | 91791545 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.0000000179507 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGGACAGA AAGTACATCC TAATGGTATC CGTCTGGGTA TCACCAAGCC TTGGATCTCG
ACCTGGTACG CCGATAAATC AGATTATGCA AATAATCTGA ACAGCGACTG GGAAGTGCGT
CAATATTTAA CTGAAAAGTT AAAAGCCGCA TCGGTATCTA AGATTGTTAT CGAACGTCCA
GCGAAAAGCA TCCGCGTTAC GATTCACACT GCCCGTCCAG GCGTTGTGAT TGGTAAGAAA
GGTGAAGACG TTGAAGTATT ACGTGCTCAA GTGGCTAAAA TCACTGGCAC TACTGCTCAA
ATCAACATCG CTGAGATCCG TAAGCCTGAA TTAGACGCTA AGCTCGTTGC TGACTCTATT
GCTCAGCAGT TAGAGCGTCG TGTTATGTTC CGTCGCGCTA TGAAGCGTGC AGTACAGAAC
GCAATGCGCA TTGGTGCTCA AGGTATCAAA GTTGAAGTTA GCGGCCGTTT AGGTGGTGCT
GAAATCGCGC GTTCTGAGTG GTATCGTGAA GGTCGTGTAC CTTTGCATAC TCTACGTGCT
GATATCGACT ATTCGACTTC TGAAAGTCAC ACGCAATACG GTGTGATTGG TGTTAAAGTT
TGGATCTTCA AAGGTGAAGT TCTAGACGGT TTAGTACCAC AGATCGAAGA GCCTAAGCAG
CAACCTAAGC GTAAGCCTCG TGCTAAATAG
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| Protein sequence | MGQKVHPNGI RLGITKPWIS TWYADKSDYA NNLNSDWEVR QYLTEKLKAA SVSKIVIERP
AKSIRVTIHT ARPGVVIGKK GEDVEVLRAQ VAKITGTTAQ INIAEIRKPE LDAKLVADSI
AQQLERRVMF RRAMKRAVQN AMRIGAQGIK VEVSGRLGGA EIARSEWYRE GRVPLHTLRA
DIDYSTSESH TQYGVIGVKV WIFKGEVLDG LVPQIEEPKQ QPKRKPRAK
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