| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0173 |
|---|
| Symbol | rplB |
|---|
| ID | 4017855 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 198225 |
|---|
| End bp | 199049 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637954149 |
|---|
| Product | 50S ribosomal protein L2 |
|---|
| Protein accession | YP_561193 |
|---|
| Protein GI | 91791542 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0090] Ribosomal protein L2 |
|---|
| TIGRFAM ID | [TIGR01171] ribosomal protein L2, bacterial/organellar |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0000000399734 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTTA TTAAGTGTAA GCCAACCTCT CCAGGTCGTC GCCACGTAGT TAAAGTGGTG
AATACAGACT TGCATAAGGG TAAACCTTTT GCAGCGCTGT TGGCGAAAAA ATCTAAAAGT
GGTGGCCGTA ACAATACTGG CCGTATCACT GTCCGTCACG TTGGTGGTGG TCACAAGCAG
CATTACCGTC TAATTGACTT CAAACGCAAT AAAGATGGTA TTCCTGCAAA AGTTGAACGT
ATTGAATATG ATCCAAACCG TACAGCGCAC ATCGCGTTAG TACTGTACGC CGATGGTGAG
CGTCGCTATA TTCTTGCTGC TAAAGGCATG AAGTCAGGCG ATCCAATCCA ATCAGGCGTT
GGTTCAGAAA TCAAGACTGG CAACTCTATG CCTCTGCGCA ACATCCCTGT GGGATCTGTT
GTTCACGCTG TCGAAATGAA GCCTGGTAAA GGTGCTCAAA TCGCGCGTTC TGCAGGTGCA
TACGTGCAAG TTATTGCTCG TGATGGCGCA TATGCAACTC TACGTCTTCG CTCTGGCGAA
ATGCGTAAAG TTCCAGTTGA TTGCCGCGCG ACATTTGGTG AAGTTGGTAA TGCCGAGCAC
ATGCTACGCC AGTTAGGCAA AGCAGGTGCC AAGCGCTGGA GAGGCGTACG CCCTACAGTT
CGTGGTGTTG CAATGAACCC GGTAGATCAC CCACACGGTG GTGGTGAAGG TCGTACTTCT
GGTGGACGTC ATCCAGTGAG TCCATGGGGT GTGCCAACTA AGGGTTATAA AACTCGTAGT
AACAAGCGCA CTGACAAGTA CATTGTACGT CGTCGTAATA AATAA
|
|---|
| Protein sequence | MAVIKCKPTS PGRRHVVKVV NTDLHKGKPF AALLAKKSKS GGRNNTGRIT VRHVGGGHKQ
HYRLIDFKRN KDGIPAKVER IEYDPNRTAH IALVLYADGE RRYILAAKGM KSGDPIQSGV
GSEIKTGNSM PLRNIPVGSV VHAVEMKPGK GAQIARSAGA YVQVIARDGA YATLRLRSGE
MRKVPVDCRA TFGEVGNAEH MLRQLGKAGA KRWRGVRPTV RGVAMNPVDH PHGGGEGRTS
GGRHPVSPWG VPTKGYKTRS NKRTDKYIVR RRNK
|
|---|
| |