Gene Sden_0154 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0154 
Symbol 
ID4017815 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp176083 
End bp177054 
Gene Length972 bp 
Protein Length323 aa 
Translation table11 
GC content47% 
IMG OID637954127 
Productbiotin--protein ligase 
Protein accessionYP_561174 
Protein GI91791523 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0340] Biotin-(acetyl-CoA carboxylase) ligase 
TIGRFAM ID[TIGR00121] birA, biotin-[acetyl-CoA-carboxylase] ligase region
[TIGR00122] BirA biotin operon repressor domain 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.00266236 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTATAC AGTGGCATAA CAAAAGACAA ATTTTAGCAT TATTATCTTC CGATCATTTT 
GTTTCCGGCG AGCAATTAGC CCAAGAATTA GCTATATCAC GCTCGGCGAT TCAACAACAG
ATCGAAGCCA TGGGCGAGTT CGGTATAGAT ATTTATTCTG TGAAGGGCAA GGGCTACAAG
CTGGCAACGC CCATCTGTCT CTTAGATGAA ACTCAGTTAT TGCAGCAGTT ATCTAACCGC
TGTTTTTACT TTAACGACAT ACCTAGCACC AATGCCTTTA TGCTCACTCA CGGCCAAGAA
CTCAAAAGTG GGGATATTTG CTTGGCAGAA TATCAATCTG CTGGCCGTGG CCGCCGTGGC
CGTCAGTGGT TATCTCCTTA TGGTCACCAT ATTTATGCTT CATTGTACTG GCGCTTGGAG
CAGGGCATGC CTCAGGCCAT GGGCTTAAGC CTAGTGGTAG CGTGCTCGAT TGTGACTGTG
CTCAAACAAA TGGGGGTGAG CGGACTCGGG CTTAAATGGC CGAATGATAT TTACCTTAAT
GACAAGAAGC TGGCCGGTAT TCTCATTGAG CTTATTAATA GTGCAGAGCA GGCGTGCCAA
TTGGTGATAG GTTTTGGGAT TAATATGAGC ATGTCTGCCA GTCAAGGTGA GCTTATCGAC
CAACCTTGGA GCGACTTGTC TACCCTCGAG TCTATGCCCG ACAAAACCGA GTTGGTAATT
GCGGTGCATA AGCAGCTAAA ACAGGATCTT AAACGCTTTG AAGCCGCGGG CCTTAAGGAT
TTTATTGATG CCTGGCAGGC GGATGATATT TTTATGGGCC GGGAAGTGAG TTTACTGATG
GCACCTAATG AAGTGACTGG GATTTATAAA GGCATAGATG AGCAAGGCGC AGTGCTGCTG
CAAACAGCAC AAGGGCTTCA GGCGTTTGTC GGCGGCGAGA TAAGCTTGAG AGCGACTAAT
AAGATGGCTT AA
 
Protein sequence
MSIQWHNKRQ ILALLSSDHF VSGEQLAQEL AISRSAIQQQ IEAMGEFGID IYSVKGKGYK 
LATPICLLDE TQLLQQLSNR CFYFNDIPST NAFMLTHGQE LKSGDICLAE YQSAGRGRRG
RQWLSPYGHH IYASLYWRLE QGMPQAMGLS LVVACSIVTV LKQMGVSGLG LKWPNDIYLN
DKKLAGILIE LINSAEQACQ LVIGFGINMS MSASQGELID QPWSDLSTLE SMPDKTELVI
AVHKQLKQDL KRFEAAGLKD FIDAWQADDI FMGREVSLLM APNEVTGIYK GIDEQGAVLL
QTAQGLQAFV GGEISLRATN KMA