| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0123 |
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| Symbol | |
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| ID | 4017207 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 134969 |
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| End bp | 136192 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 637954096 |
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| Product | general secretion pathway protein F |
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| Protein accession | YP_561143 |
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| Protein GI | 91791492 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | [TIGR02120] general secretion pathway protein F |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCCT TCGAATATAA AGCCTTAGAT AAACAGGGCA AGCAGCAAAA AGGCGTTATC
GAAGCCGATA CCGCCAGACA CGCTCGCAGC CAGCTTAGGG ATCAGCAGTT AATGCCCCTA
GAGCTTAGCC AAGTCAATGA AAAAGAGTCT AAGGCCGGAG GTCAAGGCTT TAGCCTATTT
AAGCGCGGCA TTCCCGTGGC CGACTTAGCC TTGATCACTC GCCAAATTGC CACCTTAGTG
GCGGCCGGTT TACCTATTGA AGAGGCCTTA AAAGCCGTGG GTCAGCAATC TGAGAAAGAC
CGTCTCGGCA GCATGATCAT GGCGGTGCGC TCACGGGTGG TAGAAGGTTA TAGCTTAGCC
GATTCCTTGG CCGAGTTTCC GCATATTTTC GACGATCTTT ACCGCGCGAT GGTGGCCTCC
GGTGAGAAGT CGGGCCATCT CGAAGTGGTG CTTAATCGTC TTGCCGATTA CACAGAAAGA
CGCCAACAGC TTAAATCTAA ACTCACCCAA GCCATGATTT ATCCTGTGGT ATTAACTCTG
GTCGCCATAG GTGTGATTGG GGTACTTTTA GCCGCAGTGG TGCCCAAAGT CGTCGGCCAG
TTCGAGCACA TGGGCCAAGA GTTGCCGGGC ACCACACAGT TTTTGATTTT GGCATCGGAC
TTTGTTCAAA GTTATGGTGT CTTAGTCATA GGCCTGATTG TGCTGTTATC AATTGGTTTG
CAACGGTTAC TCACCAAACC CTTATACCGA ATGAAATGGG ATACCCTGCT GCTAAGCATG
CCTGTGATAG GTAAAGTCAG TAAGGGCCTA AATACGGCTC GTTTTGCTCG AACGTTAAGT
ATTCTATCGG CAAGCTCAGT GCCTTTATTG GATGGCATGC GTATCGCTAG CGAAGTCTTG
CAAAATGTGA AAGTGCGCGC CGCTGTGGAT GAAGCCACCG CTAGGGTTCG CGAAGGTACT
AGCCTCGGGG CTGCACTCAC GCAAACCAAA CTGTTTCCCG CCATGATGCT CTATATGATC
GCCTCAGGTG AGAAGAGTGG TCAGCTGGAA AACATGCTCG AGCGCGCCGC AGATAACCAA
GACAGAGAAT TTGAAGCCAA CGTCAATATC GCCTTAGGGG TGTTTGAGCC TATGCTGGTT
GTCAGCATGG CAGCTGTGGT CTTGTTTATT GTCATGGCCA TCTTGCAGCC CATATTAGAA
TTGAACAACT TGATCAGTGG CTAG
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| Protein sequence | MAAFEYKALD KQGKQQKGVI EADTARHARS QLRDQQLMPL ELSQVNEKES KAGGQGFSLF
KRGIPVADLA LITRQIATLV AAGLPIEEAL KAVGQQSEKD RLGSMIMAVR SRVVEGYSLA
DSLAEFPHIF DDLYRAMVAS GEKSGHLEVV LNRLADYTER RQQLKSKLTQ AMIYPVVLTL
VAIGVIGVLL AAVVPKVVGQ FEHMGQELPG TTQFLILASD FVQSYGVLVI GLIVLLSIGL
QRLLTKPLYR MKWDTLLLSM PVIGKVSKGL NTARFARTLS ILSASSVPLL DGMRIASEVL
QNVKVRAAVD EATARVREGT SLGAALTQTK LFPAMMLYMI ASGEKSGQLE NMLERAADNQ
DREFEANVNI ALGVFEPMLV VSMAAVVLFI VMAILQPILE LNNLISG
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