| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0122 |
|---|
| Symbol | |
|---|
| ID | 4017206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 133422 |
|---|
| End bp | 134966 |
|---|
| Gene Length | 1545 bp |
|---|
| Protein Length | 514 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637954095 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_561142 |
|---|
| Protein GI | 91791491 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.766789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGATC AATTGGCACA AGTGTCCAAC GACTTAACCT TAGAGCTTGA AGATGCCGAT
GAGGTGTTTC ACTCCAATAG CAAGGAGCGC TTGCCGTTTG CATTTTCTCA GCGTTTTCAA
TTGGTACTGG CTAAGGAACT GGGGGTGTTA AGTCTGTTTT ATACTGACAA TACTCCGCTC
AATGCCATGC TAGAAGTACG CCGCTATACC GCCGCCGAGC TGCCTTTGAT TAAGCTTGAG
GTGAATAAGT TTGAGTCTAA ACTCACTCAA GCTTATCAGG CGAATTCCTC CGAAGCACAG
CAGCTGATGG AAGACATAGG CAACGAGATG GATTTATTCA CCCTTGCCGA AGAAATGCCT
CAGACCGAAG ATTTATTAGA AGGGGACGAT GATGCGCCTA TCATCAAGCT GATTAATGCC
TTGTTATCTG AAGCCATCAA AGAAGAAGCC TCAGATATCC ATATCGAGAC CTATGAAAAG
CAATTAATCG TGCGTTTTCG CATTGATGGT GTGCTCAAAG AAGTGCTCAA GCCTAATCGC
AAACTGTCCT CCTTACTGGT ATCGCGCATT AAGGTCATGG CCCGCCTGGA TATCGCCGAA
AAACGTGTGC CCCAAGATGG ACGTATCTCG CTGCGCATCG CGGGTCGTGC AGTGGATGTG
CGGGTATCGA CCATGCCATC GAGTCATGGC GAGCGGGTGG TGCTGCGTTT ACTGGATAAA
AACACCGGTA ATTTAGATCT TAAACAGTTA GGCATGACGC AAGGCATACG TGAGAAATTT
GATGCGCTTA TCCGCAGACC TCACGGCATT ATCTTGGTCA CAGGCCCCAC AGGCTCGGGT
AAGAGTACTA CCTTGTATGC CGGCCTTACC GAAATTAACT CTAAAGATAC CAACATATTA
ACCGTTGAAG ACCCCATCGA GTATGAACTT CATGGGGTCG GCCAGACGCA AGTAAATATC
AAGGCTGATA TGACCTTCGC CCGTGGTCTG CGTGCGATTC TACGTCAAGA TCCCGATGTG
GTCATGATAG GTGAAATTCG TGACTTAGAA ACCGCCCAAA TTGCGGTGCA AGCCTCATTA
ACCGGTCACT TAGTGATATC AACCCTGCAT ACCAATACTG CCTCTGGTGC CATTACCCGT
CTGCAAGACA TGGGGGTCGA GCCTTTCTTG GTGTCTTCGA GTCTCTTAGG GGTGTTAGCC
CAGCGCTTGA TCAGAACCTT GTGCCCAAGT TGTAAGGTAG AGCATGAGCC CGATATGCGA
GAGCGTGAGC TGTTAGGGAT TAGTGACAGT GACCCAAGGC ATATATACCG TGCCAATGGC
TGTAAGGCTT GTGGTAATAA CGGTTACCGT GGCCGTACGG GTATTCATGA ATTACTGACA
GTGGATGACA GCGTGCGTGA ACTTATCCAT GGGGGTAAGG GCGAGCTTGC TATCGAGCGT
TATATTCGTC AAAGCGTGCC TAGCATACGT CACGATGGCA TGAGCAAGGT GCTCGCCGGG
GTGACCACAC TTGAAGAAGT GCTACGTGTG ACCCGCGAGG AGTAA
|
|---|
| Protein sequence | MTDQLAQVSN DLTLELEDAD EVFHSNSKER LPFAFSQRFQ LVLAKELGVL SLFYTDNTPL
NAMLEVRRYT AAELPLIKLE VNKFESKLTQ AYQANSSEAQ QLMEDIGNEM DLFTLAEEMP
QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHIETYEK QLIVRFRIDG VLKEVLKPNR
KLSSLLVSRI KVMARLDIAE KRVPQDGRIS LRIAGRAVDV RVSTMPSSHG ERVVLRLLDK
NTGNLDLKQL GMTQGIREKF DALIRRPHGI ILVTGPTGSG KSTTLYAGLT EINSKDTNIL
TVEDPIEYEL HGVGQTQVNI KADMTFARGL RAILRQDPDV VMIGEIRDLE TAQIAVQASL
TGHLVISTLH TNTASGAITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCPS CKVEHEPDMR
ERELLGISDS DPRHIYRANG CKACGNNGYR GRTGIHELLT VDDSVRELIH GGKGELAIER
YIRQSVPSIR HDGMSKVLAG VTTLEEVLRV TREE
|
|---|
| |