Gene Sden_0122 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0122 
Symbol 
ID4017206 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp133422 
End bp134966 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content49% 
IMG OID637954095 
Producttype II secretion system protein E 
Protein accessionYP_561142 
Protein GI91791491 
COG category[U] Intracellular trafficking, secretion, and vesicular transport
[N] Cell motility 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID[TIGR02533] general secretory pathway protein E 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.766789 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTGATC AATTGGCACA AGTGTCCAAC GACTTAACCT TAGAGCTTGA AGATGCCGAT 
GAGGTGTTTC ACTCCAATAG CAAGGAGCGC TTGCCGTTTG CATTTTCTCA GCGTTTTCAA
TTGGTACTGG CTAAGGAACT GGGGGTGTTA AGTCTGTTTT ATACTGACAA TACTCCGCTC
AATGCCATGC TAGAAGTACG CCGCTATACC GCCGCCGAGC TGCCTTTGAT TAAGCTTGAG
GTGAATAAGT TTGAGTCTAA ACTCACTCAA GCTTATCAGG CGAATTCCTC CGAAGCACAG
CAGCTGATGG AAGACATAGG CAACGAGATG GATTTATTCA CCCTTGCCGA AGAAATGCCT
CAGACCGAAG ATTTATTAGA AGGGGACGAT GATGCGCCTA TCATCAAGCT GATTAATGCC
TTGTTATCTG AAGCCATCAA AGAAGAAGCC TCAGATATCC ATATCGAGAC CTATGAAAAG
CAATTAATCG TGCGTTTTCG CATTGATGGT GTGCTCAAAG AAGTGCTCAA GCCTAATCGC
AAACTGTCCT CCTTACTGGT ATCGCGCATT AAGGTCATGG CCCGCCTGGA TATCGCCGAA
AAACGTGTGC CCCAAGATGG ACGTATCTCG CTGCGCATCG CGGGTCGTGC AGTGGATGTG
CGGGTATCGA CCATGCCATC GAGTCATGGC GAGCGGGTGG TGCTGCGTTT ACTGGATAAA
AACACCGGTA ATTTAGATCT TAAACAGTTA GGCATGACGC AAGGCATACG TGAGAAATTT
GATGCGCTTA TCCGCAGACC TCACGGCATT ATCTTGGTCA CAGGCCCCAC AGGCTCGGGT
AAGAGTACTA CCTTGTATGC CGGCCTTACC GAAATTAACT CTAAAGATAC CAACATATTA
ACCGTTGAAG ACCCCATCGA GTATGAACTT CATGGGGTCG GCCAGACGCA AGTAAATATC
AAGGCTGATA TGACCTTCGC CCGTGGTCTG CGTGCGATTC TACGTCAAGA TCCCGATGTG
GTCATGATAG GTGAAATTCG TGACTTAGAA ACCGCCCAAA TTGCGGTGCA AGCCTCATTA
ACCGGTCACT TAGTGATATC AACCCTGCAT ACCAATACTG CCTCTGGTGC CATTACCCGT
CTGCAAGACA TGGGGGTCGA GCCTTTCTTG GTGTCTTCGA GTCTCTTAGG GGTGTTAGCC
CAGCGCTTGA TCAGAACCTT GTGCCCAAGT TGTAAGGTAG AGCATGAGCC CGATATGCGA
GAGCGTGAGC TGTTAGGGAT TAGTGACAGT GACCCAAGGC ATATATACCG TGCCAATGGC
TGTAAGGCTT GTGGTAATAA CGGTTACCGT GGCCGTACGG GTATTCATGA ATTACTGACA
GTGGATGACA GCGTGCGTGA ACTTATCCAT GGGGGTAAGG GCGAGCTTGC TATCGAGCGT
TATATTCGTC AAAGCGTGCC TAGCATACGT CACGATGGCA TGAGCAAGGT GCTCGCCGGG
GTGACCACAC TTGAAGAAGT GCTACGTGTG ACCCGCGAGG AGTAA
 
Protein sequence
MTDQLAQVSN DLTLELEDAD EVFHSNSKER LPFAFSQRFQ LVLAKELGVL SLFYTDNTPL 
NAMLEVRRYT AAELPLIKLE VNKFESKLTQ AYQANSSEAQ QLMEDIGNEM DLFTLAEEMP
QTEDLLEGDD DAPIIKLINA LLSEAIKEEA SDIHIETYEK QLIVRFRIDG VLKEVLKPNR
KLSSLLVSRI KVMARLDIAE KRVPQDGRIS LRIAGRAVDV RVSTMPSSHG ERVVLRLLDK
NTGNLDLKQL GMTQGIREKF DALIRRPHGI ILVTGPTGSG KSTTLYAGLT EINSKDTNIL
TVEDPIEYEL HGVGQTQVNI KADMTFARGL RAILRQDPDV VMIGEIRDLE TAQIAVQASL
TGHLVISTLH TNTASGAITR LQDMGVEPFL VSSSLLGVLA QRLIRTLCPS CKVEHEPDMR
ERELLGISDS DPRHIYRANG CKACGNNGYR GRTGIHELLT VDDSVRELIH GGKGELAIER
YIRQSVPSIR HDGMSKVLAG VTTLEEVLRV TREE