| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0121 |
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| Symbol | |
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| ID | 4017205 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 131297 |
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| End bp | 133414 |
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| Gene Length | 2118 bp |
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| Protein Length | 705 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637954094 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_561141 |
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| Protein GI | 91791490 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00685103 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATAACA AAGGGATCCG CCGTAAGCTA CTGCTGAGTG CGTTGACAGG CGCTGCATTA
CTCACATCAC AACTAGCGTG GTCGGAACAA TATGCTGCCA ACTTTAAAGG CACAGACATT
CAAGAATTCA TTAATATTGT AGGTAAAAAC CTCAATAAGA CCATAGTGGT CGACCCCACT
ATTCGCGGTA AAATCAATGT CCGCAGTTAT GATCTGCTCA ATGATGATCA ATACTATCGT
TTCTTCCTCA ACGTATTGCA AGTCTATGGC TATGCGGTTG TTGAGATGGA AAATAACATC
ATTAAGGTTA TCAAAGATAA AGACGCTAAA GTGTCGGCAA TCCGTATTGC CGATGATAAA
GTCCCTGGGG TTGGCGATGA AATGGTCACT CGTATCGTGG CGCTTTACAA CACAGAGGCG
AAGCAACTTG CGCCATTACT GCGCCAACTT AACGATAACG CTGGCGGCGG TAACGTAGTT
AATTATGACC CATCGAACGT GATGATGATA ACCGGCCGTG CCGCCGTGGT GAATAAGATC
GTTGAAATCA TTCGCCGAGT CGATAAACAA GGGGACACTG AAGTTCAAGT CGTCCCACTC
GAATATGCTT CAGCCGGCGA GATGGTGCGT ATTATCGACA CCCTTTACCG CGCCACAGCC
AACCAATCGC AAATGCCGGG TCAGTCACCG AAAGTGGTCG CCGATGAGCG TCTCAATGCT
GTGATTGTCA GTGGTGATGA GAAGAGTCGC CTGCGGGTGG TGTCACTTAT TCGTAAACTG
GATGCCGAGC AAGCCAGTAC CGGCAATACC AAGGTGCGTT ACTTGCACTA TGCCAAGGCC
GAAGATTTAG TCGAAGTGTT AACCGGTTTT GCCGAGCGTT TACAAGAAGG CGGTGATAAG
GGTGCCCAGC AGGGCGGCGC TAAGCGTCGT AATGATATCA ATATCATGGC CCATGTGGAC
ACCAATGCCT TGGTTATCAG CGCCGAGCCT GATCAGATGC GCACCATAGA AAGCGTGATT
AATCAGCTAG ATATTCGCCG TGCGCAAGTT TTGGTTGAGG CCATTATTGT TGAAGTTGCC
GAGAATGATG ATGTTGGTTT TGGCATTCAA TGGGCCAGCA TGGCTGGCGG CGGCACTCAG
TTTAACAACT TAGGCGCCAC CATAGGTGAA GTCGGTGCGG GTGTGTGGGC TGCCCGTGAA
AAAGACGTTG CTCAGGTGAC TACGATTGAT GCGAATAATA AGCCTGTAGT GAGTAATAAT
CCTAAAACCG AAGGGGACTA CACCTTGCTA GCCCAAGCGT TAGGCAAGGT TAACGGTATG
GCTTGGGGTG TGGCAAGCGG CGATTTTGGC GCGCTTATCC AAGCCGTGTC CAGCGATACT
AACTCTAACG TATTAGCCAC ACCTTCGATT ACCACCTTAG ATAATCAAGA AGCTTCTTTC
ATCGTGGGTG ACGAAGTGCC TATCTTAACT GGCAGCCAGA ACTCCAGTAA TGGCAATGCT
AACCCATTCC AGACGGTTGA GCGTAAAGAG GTCGGCGTTA AGCTTAAGGT GACACCGCAG
ATCAACGAAG GCACGGCGGT TAAGCTCACC ATTGAACAAG AAGTGTCAGG TATCAATGGT
AAGACCGGGG TGGATGTCAC CTTCGCGACT CGCCGTCTTA CGACTACGGT AATGGCAGAT
TCGGGTCAAA TTGTTGTTTT AGGCGGTTTG ATTAACGAAG AAGTGCAAGA AAGCATCCAG
AAAGTGCCTT TCTTGGGCGA CATTCCCTTT ATTGGTCATC TGTTTAAGTC GTCGTCTAGC
AGTAAGAAAA AGAAAAACTT GATGGTGTTT ATCAAGCCCA CCATTATTCG TGATGGTGTG
ATTATGGAAG GTATCGCGGG TCGTAAATAC AATTATTTCA GAGCTCTACA ACTTGAGCAG
CAGGTGCGCG GCGTTAACTT AATGCCAAAT ACCGAAGTGC CAGTGCTGGA AGAGTGGAAC
CAGGATGCGT ATATCCCTGA AGACGTTAAT CGTGTGCTTG ACAGATACAA GGATGGCAAA
GGCCTAGATA CAGACTTACG CAATAGCGAT GCGGCGCTAA AGGCCATTTC AGACAATAAA
GCATCGGCCG ATGAGTGA
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| Protein sequence | MNNKGIRRKL LLSALTGAAL LTSQLAWSEQ YAANFKGTDI QEFINIVGKN LNKTIVVDPT
IRGKINVRSY DLLNDDQYYR FFLNVLQVYG YAVVEMENNI IKVIKDKDAK VSAIRIADDK
VPGVGDEMVT RIVALYNTEA KQLAPLLRQL NDNAGGGNVV NYDPSNVMMI TGRAAVVNKI
VEIIRRVDKQ GDTEVQVVPL EYASAGEMVR IIDTLYRATA NQSQMPGQSP KVVADERLNA
VIVSGDEKSR LRVVSLIRKL DAEQASTGNT KVRYLHYAKA EDLVEVLTGF AERLQEGGDK
GAQQGGAKRR NDINIMAHVD TNALVISAEP DQMRTIESVI NQLDIRRAQV LVEAIIVEVA
ENDDVGFGIQ WASMAGGGTQ FNNLGATIGE VGAGVWAARE KDVAQVTTID ANNKPVVSNN
PKTEGDYTLL AQALGKVNGM AWGVASGDFG ALIQAVSSDT NSNVLATPSI TTLDNQEASF
IVGDEVPILT GSQNSSNGNA NPFQTVERKE VGVKLKVTPQ INEGTAVKLT IEQEVSGING
KTGVDVTFAT RRLTTTVMAD SGQIVVLGGL INEEVQESIQ KVPFLGDIPF IGHLFKSSSS
SKKKKNLMVF IKPTIIRDGV IMEGIAGRKY NYFRALQLEQ QVRGVNLMPN TEVPVLEEWN
QDAYIPEDVN RVLDRYKDGK GLDTDLRNSD AALKAISDNK ASADE
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