| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0111 |
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| Symbol | |
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| ID | 4017175 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 122366 |
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| End bp | 123046 |
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| Gene Length | 681 bp |
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| Protein Length | 226 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637954084 |
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| Product | pseudouridine synthase RluA-like protein |
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| Protein accession | YP_561131 |
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| Protein GI | 91791480 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR01621] pseudouridine synthase Rlu family protein, TIGR01621 |
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Plasmid Coverage information |
| Num covering plasmid clones | 30 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTATCAAA TAATCAGTGA TGAATCCGAC TTTATTGTCA TAGATAAGTA TGCTGGTGTG
CATTTTCATA GCCAGGATGG CAGCGCCGGC GTGGTCGCGC AATTAGAAGC TGACTTAGGA
ATTAAGCTGT TTGCAGTACA CAGATTAGAC ACGCCCACAT CGGGACTGCT TATCTTGGCT
AAAAATCCTC TAGCGGCGCG GCGTTTTACT GAAATGTTCA CTGAGCATAA AGTACAGAAA
TACTACCTAG CCATAGCCCA AGGTAAACCT AAGAAGAAAC AGGGCTGGGT AATAGGGGAT
ATGGCTAAGG CTCGCCGCAG TATGTTTAAG CTGCTTCGCA GCACTGAGAA TCCTGCAGTA
ACACAGTTTT TCTCCCATTC CATCGTCGAA GGATTACGTT TATATCTGCT TAAACCTCAT
TCGGGCAAGA CACATCAACT TAGGGTGGCC TTAGCCAGTA TTGGCGTGCC CATTTTAGGG
GATAAGCTCT ACGGCGTGAA CTCGGCGGAG CATGACAGAT GCTACTTACA CGCCTATTGC
TTGGATTTTA GCTATCAAGG TAAAGCCTTT CATTATCTTT GCATGCCAAC TCAAGGCAAT
ATTTTTGAGA TGCAAGCTGT GCAGCAACAG CTTACTCAAC AGTGGTCTCA CCCTGAATTA
TTATCTTGGG CTGCACGCTA G
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| Protein sequence | MYQIISDESD FIVIDKYAGV HFHSQDGSAG VVAQLEADLG IKLFAVHRLD TPTSGLLILA
KNPLAARRFT EMFTEHKVQK YYLAIAQGKP KKKQGWVIGD MAKARRSMFK LLRSTENPAV
TQFFSHSIVE GLRLYLLKPH SGKTHQLRVA LASIGVPILG DKLYGVNSAE HDRCYLHAYC
LDFSYQGKAF HYLCMPTQGN IFEMQAVQQQ LTQQWSHPEL LSWAAR
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