Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sden_0083 |
Symbol | |
ID | 4017131 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella denitrificans OS217 |
Kingdom | Bacteria |
Replicon accession | NC_007954 |
Strand | + |
Start bp | 91505 |
End bp | 93199 |
Gene Length | 1695 bp |
Protein Length | 564 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637954056 |
Product | urocanate hydratase |
Protein accession | YP_561103 |
Protein GI | 91791452 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG2987] Urocanate hydratase |
TIGRFAM ID | [TIGR01228] urocanate hydratase |
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Plasmid Coverage information |
Num covering plasmid clones | 28 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATACTA ACAATAACAG GCACGACCCT AGCCGCCGCA TTATCGCCCC TCACGGCAGC AAACTTAGCT GTAAAAGCTG GTTAACCGAA GCGCCGATGC GCATGCTGAT GAATAACTTG CACCCAGATG TGGCCGAGCG CCCTGAAGAT CTCGTGGTAT ACGGCGGTAT TGGCCGTGCG GCCCGTGATT GGCAAAGCTA CGACAAGATA ATCGAAGTGC TGCAGCGCTT AGAAGATGAT GAAACCTTAT TGGTTCAGTC GGGTAAGCCT GTCGGTGTGT TTCGCACCCA CGCGGATGCG CCGCGGGTCT TGATTGCTAA CTCTAACTTA GTACCCCACT GGGCTAATTG GGAGCATTTC AACGAGTTAG ATAAGTTAGG TTTGGCCATG TATGGCCAGA TGACCGCAGG TTCTTGGATT TACATTGGTA CCCAAGGCAT AGTGCAAGGC ACCTACGAGA CTTTTGTGTC TGTGGCGAAA CAGCACTTTG ACGGTGTCGC AAAGGGTAAG TGGGTACTCA CTGGCGGCCT TGGCGGCATG GGCGGCGCGC AACCTTTAGC GGGCACCATG GCAGGTTTTT CTGTATTAGC CTGTGAAGTG GATGAAACTC GTATCGATTT TCGCCTACGT ACCCGTTATG TGGACAAAAA AGCCAATACC TTAGATGAAG CATTGGCCAT GATAGATGAG GCCAATAAAG CGGGTAAGCC TGTGTCTGTT GGGCTACTGG CCAATGCTGC CGATGTGTTT GCCGAACTAG TCGAGCGTGG TATTACGCCA GATGTAGTGA CAGATCAAAC CTCAGCACAC GACCCATTAA ACGGTTACTT GCCACAGGGC TGGAGCTTAG CGCAAGCCGC CGCTATGCGT AAATCCGATG AAGCAGCCGT GGTTAAGGCG GCTAAAGCTT CCATGGCAGT ACAAGTGAAG GCCATGTTGG ACTTGCAAGC CGCAGGTGCT GCGACCTTCG ATTACGGCAA CAACATTCGC CAAATGGCCC AAGATGTCGG TCTAGTAAAC GCCTTCGATT TCCCAGGTTT CGTGCCAGCT TATATTCGAC CCTTATTCTG CGAAGGCATA GGCCCGTTCC GCTGGGTGGC GCTTTCTGGC GATCCAGAAG ATATCTACAA GACAGACGCC AAAGTGAAAG AACTTATCCC AGACGATAAG CACCTGCACA ACTGGTTAGA CATGGCCCGT GAGTGCATTG CCTTCCAAGG TCTGCCAGCC CGTATTTGCT GGGTTGGCCT AAAAGACAGG GCACGCCTTG CGGCGGCGTT CAATGAAATG GTTAAAAATG GCGAGTTATC GGCGCCTGTG GTGATTGGCC GCGACCATCT CGATAGCGGC TCGGTTGCCA GCCCAAACCG TGAAACTGAA TCTATGATGG ATGGCTCGGA TGCGGTTTCT GACTGGCCAT TACTCAATGC GCTGTTGAAT ACTGCCAGCG GCGCTACTTG GGTGTCATTG CACCATGGCG GCGGCGTAGG TATGGGCTTT AGTCAGCATT CTGGTGTGGT TATCGTCTGT GATGGCACTG ATGCCGCAGC TAAGCGTGTC GAGCGGGTGC TATGGAATGA CCCAGCCACA GGTGTGATGC GTCACGCCGA TGCAGGCTAT GAGATAGCAA AAAATTGTGC CAGAGAGCAG GGCTTAGACT TGCCTATGCT AGATGTACCT AAGAAGGGGT TGTAA
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Protein sequence | MDTNNNRHDP SRRIIAPHGS KLSCKSWLTE APMRMLMNNL HPDVAERPED LVVYGGIGRA ARDWQSYDKI IEVLQRLEDD ETLLVQSGKP VGVFRTHADA PRVLIANSNL VPHWANWEHF NELDKLGLAM YGQMTAGSWI YIGTQGIVQG TYETFVSVAK QHFDGVAKGK WVLTGGLGGM GGAQPLAGTM AGFSVLACEV DETRIDFRLR TRYVDKKANT LDEALAMIDE ANKAGKPVSV GLLANAADVF AELVERGITP DVVTDQTSAH DPLNGYLPQG WSLAQAAAMR KSDEAAVVKA AKASMAVQVK AMLDLQAAGA ATFDYGNNIR QMAQDVGLVN AFDFPGFVPA YIRPLFCEGI GPFRWVALSG DPEDIYKTDA KVKELIPDDK HLHNWLDMAR ECIAFQGLPA RICWVGLKDR ARLAAAFNEM VKNGELSAPV VIGRDHLDSG SVASPNRETE SMMDGSDAVS DWPLLNALLN TASGATWVSL HHGGGVGMGF SQHSGVVIVC DGTDAAAKRV ERVLWNDPAT GVMRHADAGY EIAKNCAREQ GLDLPMLDVP KKGL
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