| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0044 |
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| Symbol | |
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| ID | 4017243 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 56758 |
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| End bp | 58800 |
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| Gene Length | 2043 bp |
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| Protein Length | 680 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637954017 |
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| Product | type III secretion FHIPEP |
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| Protein accession | YP_561064 |
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| Protein GI | 91791413 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1298] Flagellar biosynthesis pathway, component FlhA |
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| TIGRFAM ID | [TIGR01398] flagellar biosynthesis protein FlhA |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGATA AATTAAGAGA TTATGGCCTC AGGGGTGACG TTTTTTTTGC TGTAGGCGTT
ATTGCAATTT TGATGCTGTT GTTTGTTCCA ATTCCGGCCA CAGTATTAGA TGTGCTGATT
ATCCTCAATA TTAGTTTTGC ATTACTTATT TTATTGCTCA CCTTTTATTC TGAGCGGCCA
CTGGATTTTT CTACGTTACC ATCGGTGCTA TTGCTAGCAA CCTTGTTTCG ACTTGGATTG
AATATTGCTT CTACTCGACT CATTTTAACT GATGGCAATG CCGGGAAAGT GATCTCCGCT
GTCGGGTCAT ATGTGGTTGC TGGTAATTAT GTTATCGGTT TAGTTATTTT CTTTATTCTT
GTTGTGGTGC AATTTTTGGT GGTCACCAAT GGGGCGCAAC GAGTTGCGGA GGTGACAGCT
CGCTTTACCT TAGATTCAAT GCCCGGTAAA CAAATGAGCA TAGATGCTGA TTTGAACATG
GGGATTATCG ATGAGAAGCA AGCTCAAGAG CGAAGAGCTT ATATTGAGAA AGAAGCTAAC
TTCTATGGCG CAATGGACGG GGCAACCAAG TTTGTTAAAG GGGACGCAAT TGCTAGTATT
ATCATTATTT TAATTAATAT TATTGGTGGT CTTGCAATTG GGGTTGCACA GGCGGGCTTA
CCATGGCAAC AAGCACTTCA TATCTATACC CTGCAAACTG TGGGTGATGG AATCGTGACT
CAGATCCCAT CTTTAATCAT TGCCGTGGGC ACCGGTATTA TTATCACAAG GGCTGCGACT
CAAGGTAATC TTGCAGATCA ATTGTTTGGT CAAATTGTCA CCCATCCTTT TACTTTGACC
TTAGTTGCTG TAGTGATTTC ATCAGCAGCA TTCTTACCAG GATTACCTTC ACTCACATTA
ATACTGGTTG GCATCACTTT TGCGCTATTT GGGTATTTTG CCCACAAGAA AAAACAACTT
AAATTGATTG AAAAAACTTT TAGGGAATTT GAAAATACTA AAAAAACATC TACTCAAGAA
AGTTTGTTGC AGGTCGCTTT TTCATCGCAA ATTTGGCCGC AAATTTTGGC TGAAGAAACT
GAAATTCAGC GTCAGTTCAG TCGTTTTAAA TCTGAGTTTG AAAGTAAGTA TGGTTTGTTT
CTACCTGAGT TATTGTTGAA AGCCGAATCG GTTTTGAAAG CCGATGAATA TTCCATTCGT
CTTTCAAATA TTGAGTTTGC GTCGGGGGTG CTCCATCCCG ATAAAATGAT GGTGATTGAT
CCACAGAATA AACTCGACAA AAAAATGGGA CTAGCAGCGG TTGAACCGGC ATATGGTTTG
AATGCTTTGT GGGTAGATGC TGACAAAGCG AAAGACATTA AGCAGGGTGG AATGACGGTT
GTTGAACCCA TTTCAGTTTT GATGACACAT ATAACAGAAT TTGTTAAATC TCACTCTGCA
GAATTTGTCA CTCGTCAGTT CGTGGATCAG CTTGTTGCAG AGCAGCGCGA GATTAACGAA
GTGCTTGTGT CGGAGGTTAT TCCCACACAG TTAGCTATTG CTGATGTGCA GCAGATATTT
ACTCATTTAG TTCAAGAGAA AGTTTGTTTG CATAATGCTA ACCATATTTT TGAAGTTCTT
GCCGATAAAG CACGACATGA AAAAGATGTT CAGTTGTTAA CTGAGTTTGT TAGGCAGAGA
TTACGGAATC AACTAACCAG TTTACTACTG GATAATGATA GAACACTCAA TATTATTTCT
ATAGCGCCAT TGCTGGAACG AGCCTTGTTA AATGGTGCGG CTAATGTCAT CACTAAAGGC
CTGCAAATTT CACCGACTGA TTTGGATAGT TTAGTGAAGC AGGCTGTATT ATTTGTCGAA
AAAGCCATTT CATTAGGTGC TGAACCTGTG CTTTTAGTGA ACCCCACGAT TCGTCGACCT
TTATGGCAGT TATTAAATCG CACCGTTCCA TTGTTACATG TGATCTCAGT GAACGAAGTC
CCACATCATA TTAAGCTGAA TAGCCTAGGT GTTATTCAAG CTTACAATCA GCAGGTTGCT
TAA
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| Protein sequence | MIDKLRDYGL RGDVFFAVGV IAILMLLFVP IPATVLDVLI ILNISFALLI LLLTFYSERP
LDFSTLPSVL LLATLFRLGL NIASTRLILT DGNAGKVISA VGSYVVAGNY VIGLVIFFIL
VVVQFLVVTN GAQRVAEVTA RFTLDSMPGK QMSIDADLNM GIIDEKQAQE RRAYIEKEAN
FYGAMDGATK FVKGDAIASI IIILINIIGG LAIGVAQAGL PWQQALHIYT LQTVGDGIVT
QIPSLIIAVG TGIIITRAAT QGNLADQLFG QIVTHPFTLT LVAVVISSAA FLPGLPSLTL
ILVGITFALF GYFAHKKKQL KLIEKTFREF ENTKKTSTQE SLLQVAFSSQ IWPQILAEET
EIQRQFSRFK SEFESKYGLF LPELLLKAES VLKADEYSIR LSNIEFASGV LHPDKMMVID
PQNKLDKKMG LAAVEPAYGL NALWVDADKA KDIKQGGMTV VEPISVLMTH ITEFVKSHSA
EFVTRQFVDQ LVAEQREINE VLVSEVIPTQ LAIADVQQIF THLVQEKVCL HNANHIFEVL
ADKARHEKDV QLLTEFVRQR LRNQLTSLLL DNDRTLNIIS IAPLLERALL NGAANVITKG
LQISPTDLDS LVKQAVLFVE KAISLGAEPV LLVNPTIRRP LWQLLNRTVP LLHVISVNEV
PHHIKLNSLG VIQAYNQQVA
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