Gene Sden_0028 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0028 
Symbol 
ID4017894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand+ 
Start bp34705 
End bp35268 
Gene Length564 bp 
Protein Length187 aa 
Translation table11 
GC content45% 
IMG OID637953998 
ProductDNA topoisomerase I 
Protein accessionYP_561048 
Protein GI91791397 
COG category[L] Replication, recombination and repair 
COG ID[COG0551] Zn-finger domain associated with topoisomerase type I 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.0369311 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTAAAA TCGATCAACA GCTGTTTAAT GCCCATGAAC ATGCGTTGGA AAAAGAGTAT 
GAACAGTGCC CTAAGTGCGG CTGCGAGTTA TCGATTAGGC ACAGTAAACA TGGTGGTTTT 
GTCGGCTGCA ATAATTACCC AAGCTGTGAT TATACAAGGC CCTTAGTACA ACATGAGGCC 
ATAGATACCC AATTGATTGC GGGCTCACAA TGTCCGAAAT GTGGCCATGA ATTGGCGGTT 
AAATCTGGCA GATTCGGTAT TTTTATCGGT TGTAGCCATT ATCCTGAATG CAATCACATA 
GAAAAAACCG ATCATAGTGT GGCTAAGGCG CCTATCGAGT GTCCTTCATG CCATAAAGGC 
CAACTTGAGT CGCGCACTAG CCGCTTCGGT AAAACTTTTT TCGCCTGCAA TCATTACCCT 
AAGTGTAAAT TCATTGTCAA TTACCCGCCT CACGATGAAG CCTGCCCCGA TTGTGGTTTT 
GGCATCTTGG TCGAACGAAA AGGCGCAGCG GGTTTACGCT TAGAATGTCC ACAAAAGGCC 
TGCAAGTACA AACGGCCGAT ATAA
 
Protein sequence
MSKIDQQLFN AHEHALEKEY EQCPKCGCEL SIRHSKHGGF VGCNNYPSCD YTRPLVQHEA 
IDTQLIAGSQ CPKCGHELAV KSGRFGIFIG CSHYPECNHI EKTDHSVAKA PIECPSCHKG 
QLESRTSRFG KTFFACNHYP KCKFIVNYPP HDEACPDCGF GILVERKGAA GLRLECPQKA 
CKYKRPI