| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0025 |
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| Symbol | |
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| ID | 4017891 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | + |
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| Start bp | 31937 |
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| End bp | 33046 |
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| Gene Length | 1110 bp |
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| Protein Length | 369 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637953995 |
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| Product | peptidoglycan-binding LysM |
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| Protein accession | YP_561045 |
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| Protein GI | 91791394 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1652] Uncharacterized protein containing LysM domain |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATGCCA CCATGAAACG CATACTTTTA TTACTATTTC TAACGTTGGG CGTGCCGCAA
TTACAGGCTG ACACTTTGGT TTTAAAATCT GGGCATCCTG ATACTTATGT GGTTAAAAAA
GGCGATACCC TCTGGGATAT CTCAGGGTAT TTCTTAAATG ACCCTTGGCG CTGGCCCACC
TTGTGGGGTG TAAATCCTCA TATCGCCAAT CCCCATCTGA TTTACCCTGG CGACCAATTG
ACCTTAGTAT TTATTGATGG TCAACCTAGA TTGGTGCGGA ATAAAACCCT GCTCAAGAAG
TCGGTAGAAG GTAGGGTTAA ATCGAAGAAT GCCGCTATCC CAGCGGTAGC GTTATCTTTG
ATACAGCCAT ATTTAGCCCA AAATCGTATT GTCGAGAAAG CCTGGTTAGA AGCTCTACCT
ATGGTACTTG GCGGCGAAAG CCCTTCTAAG CATCATATTG TTGGCGATAT CGTCTATGTC
GATACTAATA TGCCACTCGG TGAGAAGGTT GCCATTTACG TTTCTGGCCG AGAGTTTTTT
CAGGCGAGCA CAAATGAATC CTTAGGGCAG GAGATTATCC TCAGCGCTAG CGGGCGAGTG
GTGGAGTCTG GCGAAATCTC TAAAGTTAAA TTGTTAACTA ACCTACAGGA AACAAAAGTG
GGTTTTAGGG TTGCACCTGT TGAAGATGAA GCCTTGATGT CGGCGCTGTT TATGCCTAAA
GCGGCTCAAC TGGCCGAACC CACAGAGGTA CTTGCAATCG AGAAAGACAT CCGCGAAGTG
GGTAAGCTGG ATGTGGTGTA TCTGGACAGG GGCAAGGTCG ATGGGGTTGA GCCTGGACAT
GTGTTTGCCA TTTATCGCGA TGGAGAGCGA GTGGTCATTG GCAAAGATGG CTTACCGGTG
CGAGAAATCG ACAGATCATC ATACGATAAC TTAGTGGCTA AGTTTTCCGA TGACAGAGTC
TATAAAGTCC CCGATGTTTT CAACGGTAAT ATTATGGTGT TCAAAGTGTT TGATAAAACA
AGCATGGCAC TGATTATGTC TAATGCTCAT CCAGTGAGAG TTAAAGATAA GCTTATGACG
CCAGATCCTA AGGCACTGCG GAGTTTTTAA
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| Protein sequence | MDATMKRILL LLFLTLGVPQ LQADTLVLKS GHPDTYVVKK GDTLWDISGY FLNDPWRWPT
LWGVNPHIAN PHLIYPGDQL TLVFIDGQPR LVRNKTLLKK SVEGRVKSKN AAIPAVALSL
IQPYLAQNRI VEKAWLEALP MVLGGESPSK HHIVGDIVYV DTNMPLGEKV AIYVSGREFF
QASTNESLGQ EIILSASGRV VESGEISKVK LLTNLQETKV GFRVAPVEDE ALMSALFMPK
AAQLAEPTEV LAIEKDIREV GKLDVVYLDR GKVDGVEPGH VFAIYRDGER VVIGKDGLPV
REIDRSSYDN LVAKFSDDRV YKVPDVFNGN IMVFKVFDKT SMALIMSNAH PVRVKDKLMT
PDPKALRSF
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