| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0018 |
|---|
| Symbol | |
|---|
| ID | 4017810 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella denitrificans OS217 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007954 |
|---|
| Strand | + |
|---|
| Start bp | 25312 |
|---|
| End bp | 26769 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637953988 |
|---|
| Product | K+ transporter Trk |
|---|
| Protein accession | YP_561038 |
|---|
| Protein GI | 91791387 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0168] Trk-type K+ transport systems, membrane components |
|---|
| TIGRFAM ID | [TIGR00933] potassium uptake protein, TrkH family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAATATA AAACAATAAT AAGGATCACA GGTTTGTTGA TGGGGTTATT CTCTATCACT
ATGCTTCCGC CTGCATTAAT TGCCGTATTT TACGGTGATG GCGGCGGTAC AGCATTTATT
AAGGCGTTTG TTGTCAGTAT CTTGCTGGGA TTAATGCTTT GGTACCCGAA CCGTCATCAA
AAAGCCGAAT TAAGAACCCG CGAAGGCTTT CTCATTGTGG TGCTGTTTTG GACTGTACTG
GGCTCCATTG GCGCCTTGCC GTTTATTTTC TCAAAGGTGC CAGATTTAAG CTGGACTGAC
AGCTTCTTTG AGTCTTTCTC TGCGCTGACG ACCACTGGGG CTACCGTCAT TGTTGGCCTA
GATACCTTGC CCAAGGCTGT GCTGTTTTAT CGCCACTTAC TGCAATGGAT GGGCGGCATG
GGTATCATTG TGCTCGCTGT GGCTATCCTG CCACTGCTGG GTATTGGTGG TATGCAGTTG
TATAAGGCCG AGGTGCCAGG GCCGGTGAAA GACAGTAAGA TGACCCCGCG CATTGCCGAG
ACAGCCAAGG CCTTATGGTA TATTTATTTA TTGCTGACCG TGTCTTGTGC GACGGCATTC
TATTTTGCGG GCATGAGTGT GTTTGACGCC ATTTGTCATT CATTTTCCAC CATAGCCATA
GGTGGGTTTT CAACTCATGA CGCGAGTATT GGTTACTTTA ATAGCCCTAT GATTAACACT
ATTTGCGCTG TGTTTTTGCT TATTGCTGCG GTGAATTTTA GTCTGCACTT TGCTGCATTC
TCCTTGAGGG GCATTAATTT CAAGGTCTAC TTTAAAGATA CCGAATTTAA AGCTTTAATT
GCTATCCAGC TGATATTAAC CGCTATCTGC TTTGTGACTC TCTATTCCAC TGGGGTTTAC
GACTCGCCTG AACAAACCTT AGATTATGCC TTCTTTCAGG TGGTTTCTAT TTCTACCACC
GCAGGATTTG GTACCGAGAG TTTCCATACT TGGCCACTGT TTTTGCCCAT ATTACTGATA
TTTTCAAGTT TCATTGGTGG TTGCGCCGGC TCTACGGGGG GCGGCATGAA GGTTATTCGA
CTTATCTTGT TGCTACTGCA GGGCTCACGT GAGTTAAAAC GCTTGGTGCA CCCTAAGGCC
ATGTATTCCA TTAGGATCGC AGGTTCGGCC TTGCCGGACA GAATCATTGA TGCGGTGTGG
GGCTTTTTCT CGGCTTACGC CTTAGTGTTT GTTGTCTGCA TGTTGGCCTT GATGATGATG
GAAATGGATG CAATAACCGC CTTTAGTGCT ACTGCGGCCA GCTTAAATAA CTTAGGCCCA
GGGCTAGGTG ATGTGGCCAA TAATTATGCC AGTATCAGTG ATGGCGCCAA ATGGGTGTTA
GTCACGGCTA TGTTATTTGG CCGCTTGGAA GTGTTCACCT TATTAGTGCT ATTCACCCCG
ACATTCTGGA AAAACTAA
|
|---|
| Protein sequence | MQYKTIIRIT GLLMGLFSIT MLPPALIAVF YGDGGGTAFI KAFVVSILLG LMLWYPNRHQ
KAELRTREGF LIVVLFWTVL GSIGALPFIF SKVPDLSWTD SFFESFSALT TTGATVIVGL
DTLPKAVLFY RHLLQWMGGM GIIVLAVAIL PLLGIGGMQL YKAEVPGPVK DSKMTPRIAE
TAKALWYIYL LLTVSCATAF YFAGMSVFDA ICHSFSTIAI GGFSTHDASI GYFNSPMINT
ICAVFLLIAA VNFSLHFAAF SLRGINFKVY FKDTEFKALI AIQLILTAIC FVTLYSTGVY
DSPEQTLDYA FFQVVSISTT AGFGTESFHT WPLFLPILLI FSSFIGGCAG STGGGMKVIR
LILLLLQGSR ELKRLVHPKA MYSIRIAGSA LPDRIIDAVW GFFSAYALVF VVCMLALMMM
EMDAITAFSA TAASLNNLGP GLGDVANNYA SISDGAKWVL VTAMLFGRLE VFTLLVLFTP
TFWKN
|
|---|
| |