| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0015 |
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| Symbol | fadB |
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| ID | 4017807 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 20924 |
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| End bp | 23074 |
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| Gene Length | 2151 bp |
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| Protein Length | 716 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637953985 |
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| Product | multifunctional fatty acid oxidation complex subunit alpha |
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| Protein accession | YP_561035 |
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| Protein GI | 162210779 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | [TIGR02437] fatty oxidation complex, alpha subunit FadB |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000759827 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCTACC AAAGCCCCAC AATTCAGGTT GAGTTACTTG AAGATAATAT TGCCAAGCTG
TGCTTTAACG CACCTGGCTC GGTTAACAAA TTCGACAGAG AAACTCTTGC CTCGCTAGAC
GCTGCATTAG ACAGCATCAA ACAGAACGCT AGCATACAAG CGCTGGTGTT AACCTCAGCA
AAAAGCACCT TTATCGTGGG TGCGGACATC ACCGAATTTT TAGGTCTATT TAAGCAAGAT
GATGCCACCT TGCTCACTTG GGTTGAACAA GCAAATGCCG TGTTCAATAA ATTAGAAGAC
CTGCCGTTCC CGACTATCTC CGCCATCAAT GGTTTTGCTC TGGGTGGCGG TTGTGAAACC
ATTTTAGCCA CAGACTTCCG TGTTGCTGAT ACCAATGCGC GCATCGGTCT GCCTGAAACC
AAACTGGGAC TCATTCCTGG ATTTGGCGGC ACAGTGCGCT TACCTCGCGT TATTGGTGCT
GACAACGCGC TAGAGTGGAT CACCACAGGT AAAGAACAAC GCCCAGATGA TGCCCTGCAA
GTGGGTGCCA TCGATGCGGT TGTTGAACCA GAAAACTTAT TAGCCGCTGC GCTACAAATG
CTTAAAGATG CCCTAGCTGA AAAGCTAGAC TGGCAAGCAC GCCGTAAGCG TAAGCAATCA
CCATTAGCAC TGCCAAAACT TGAAGCCATG ATGTCCTTCA CCACGGCAAA AGGCATGGTG
TATGCCGTTG CTGGTAAACA TTATCCGGCG CCTATGGCTG CTGTCAGTGT TGTAGAACAA
GCGGCAACGT TAGACAGAGC CGGTGCATTA AAAGTTGAAA ACCTCGCCTT CATCAAGCTC
GCTAAAACCG AAGTAGCTAC GGCTTTAATC GGTATTTTCT TAAACGATCA ATTCGTTAAA
GGCAAAGCTA AGAAAGCCGG CAAGCTAGCA AAAGACGTTA ATAGTGCTGC GGTATTGGGT
GCAGGTATCA TGGGCGGCGG TATCGCTTAC CAGAGCGCCA GCAAAGGCAC ACCAATAGTA
ATGAAAGACA TTGCCCAGCC AGCCCTAGAA TTAGGTTTGA ATGAAGCCGC TAAGATTTTA
GCCACCCAAG TGGCTCGTGG TCGTTCAACA CCAGAAAAAA TGGCCAAGGT ACTTAACAAC
ATTACTCCAT CATTGGACTA CGCTGCCATT AAGCATAGCG ACATTGTGGT TGAAGCAGTA
GTTGAGCATC CAAAAGTGAA GGCTACAGTA CTGGCAGAAG TTGAAGATTA TGTCGCAGAA
GATGCCATCA TCGCCTCTAA CACTTCGACG ATTTCTATCA ATTTATTAGC CAAAAGCCTT
AAGAAGCCTG AACGCTTCTG CGGCATGCAC TTCTTTAACC CAGTGCATAA AATGCCATTA
GTTGAAATCA TCCGTGGTGA GCACAGCTCA GAAGAGACCA TCGCCTCTGT TGTGGCCTAT
GCCAGCAAAA TGGGCAAGAC GCCAATCGTC GTTAACGATT GTCCAGGCTT CTTCGTTAAC
CGCGTGTTAT TCCCCTACTT TGCTGGTTTC AATGGTCTGC TTGCCGATGG CGCTGACTTT
GCCGCTGTCG ATAAAGTCAT GGAAAAACAG TTCGGTTGGC CAATGGGCCC AGCATATTTA
CTTGATGTGG TTGGCCTTGA TACGGGTCAT CATGCACAAG CGGTAATGGC TGAAGGCTTC
CCTGACCGCA TGGGTAAAAA TGGCACTGAC GCGATTGATA TAATGTTTGA AAACAAACGC
TTAGGGCAGA AAAACTCAAA AGGTTTCTAT GCTTACTCTG TTGACCGTCG TGGCAAACCG
AAGAAAGATA TCGATGCCAC TAGCTACCAG TTATTAGGTG CAGCTTTTGG TGAATTAAAA
GCATTTGAAG CGGATGACAT TATTGCCCGT TGTATGATCC CTATGATCAT TGAAACAGTA
CGTTGCTTAG AAGAAGGCAT CATAGCTTCT CCTGCTGAAG GCGATATGGG TCTGGTTTAC
GGTCTAGGTT TCCCACCATT CCGTGGTGGT GTATTCCGTT ATATAGATAC CATGGGCGTA
GCAAACTTCG TCGCTCTGGC AGACAAATAC GCACATTTAG GTGGCTTATA TCAAGTGACT
GATGCGATGC GTGAACTTGC AGCCAATAAC GGTAGCTACT ACCAAGCCTA A
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| Protein sequence | MIYQSPTIQV ELLEDNIAKL CFNAPGSVNK FDRETLASLD AALDSIKQNA SIQALVLTSA
KSTFIVGADI TEFLGLFKQD DATLLTWVEQ ANAVFNKLED LPFPTISAIN GFALGGGCET
ILATDFRVAD TNARIGLPET KLGLIPGFGG TVRLPRVIGA DNALEWITTG KEQRPDDALQ
VGAIDAVVEP ENLLAAALQM LKDALAEKLD WQARRKRKQS PLALPKLEAM MSFTTAKGMV
YAVAGKHYPA PMAAVSVVEQ AATLDRAGAL KVENLAFIKL AKTEVATALI GIFLNDQFVK
GKAKKAGKLA KDVNSAAVLG AGIMGGGIAY QSASKGTPIV MKDIAQPALE LGLNEAAKIL
ATQVARGRST PEKMAKVLNN ITPSLDYAAI KHSDIVVEAV VEHPKVKATV LAEVEDYVAE
DAIIASNTST ISINLLAKSL KKPERFCGMH FFNPVHKMPL VEIIRGEHSS EETIASVVAY
ASKMGKTPIV VNDCPGFFVN RVLFPYFAGF NGLLADGADF AAVDKVMEKQ FGWPMGPAYL
LDVVGLDTGH HAQAVMAEGF PDRMGKNGTD AIDIMFENKR LGQKNSKGFY AYSVDRRGKP
KKDIDATSYQ LLGAAFGELK AFEADDIIAR CMIPMIIETV RCLEEGIIAS PAEGDMGLVY
GLGFPPFRGG VFRYIDTMGV ANFVALADKY AHLGGLYQVT DAMRELAANN GSYYQA
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