Gene Sden_0010 details

Gene Information

• Locus tag: Sden_0010
• ID: 4017802
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella denitrificans OS217
• Kingdom: Bacteria
• Replicon accession: NC_007954
• Strand: +
• Start bp: 14373
• End bp: 14936
• Gene Length: 564 bp
• Protein Length: 187 aa
• Translation table: 11
• GC content: 43%
• IMG OID: 637953980
• Product: DNA-3-methyladenine glycosylase I
• Protein accession: YP_561030
• Protein GI: 91791379
• COG category: [L] Replication, recombination and repair
• COG ID: [COG2818] 3-methyladenine DNA glycosylase
• TIGRFAM ID: [TIGR00624] DNA-3-methyladenine glycosylase I

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.00154604
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCAAGTGA ATCGCTGTGC TTGGGTCAGT GATGACCCGC TTTATCAAGA CTATCATGAC 
AAGGTTTGGG GCAGGCCAGA GTACGATAGT CAGCAATTAT TCGCCAAACT CTGCTTGGAT 
GGTCAACAGG CGGGGTTATC TTGGATCACT ATTCTAAAGA AACAACAAAA CTATGAGCGG 
CTATTTGCTA ACTTCGACCC TAGGTTAATC GCTGAATTTG ATGATGCCAA AGTTGAAGAG 
TTAATGTTAG ATGTAGGTAT AGTGCGTAAT CGTCTTAAAG TGAATTCCAT TATTCGTAAT 
GCCAAAGCCT ATTTGGCCAT GGAGCAACAA GGGATTAATT TTTCCCAGTT CCTATGGGCC 
TTTGTTGGCG GCGCACCTAA GCTAAATAAT TTCTCCTCCA TGGCAGATGT GCCAGCACAA 
ACCCCTGAGT CTGAAGCCAT GTCTAAGGCA CTTAAAAAGT TAGGTTTTAA CTTTGTTGGC 
CCGACGATAT GCTATGCCTT TATGCAAGCC GTAGGTATGG TGAACGATCA TACTCAAGAT 
TGTTTTTGTG CAACTGAGAA GTAG 

 

Protein sequence

MQVNRCAWVS DDPLYQDYHD KVWGRPEYDS QQLFAKLCLD GQQAGLSWIT ILKKQQNYER 
LFANFDPRLI AEFDDAKVEE LMLDVGIVRN RLKVNSIIRN AKAYLAMEQQ GINFSQFLWA 
FVGGAPKLNN FSSMADVPAQ TPESEAMSKA LKKLGFNFVG PTICYAFMQA VGMVNDHTQD 
CFCATEK