| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sden_0008 |
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| Symbol | glyS |
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| ID | 4017800 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella denitrificans OS217 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007954 |
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| Strand | - |
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| Start bp | 11263 |
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| End bp | 13347 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 637953978 |
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| Product | glycyl-tRNA synthetase subunit beta |
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| Protein accession | YP_561028 |
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| Protein GI | 91791377 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0751] Glycyl-tRNA synthetase, beta subunit |
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| TIGRFAM ID | [TIGR00211] glycyl-tRNA synthetase, tetrameric type, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.829353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTG AAAACTTACT CATAGAAATT GGTACCGAAG AGTTACCGCC GAAATCACTG
CGTACCTTGG CCGATTCTTT CCTCGCTAAC TTCAGTGATG AACTGGTAAA AGCCGATTTG
CCGTTTACCG CAGCAACTTG GTATGCGGCC CCTCGCCGCC TAGCATTAAG CATCACAGGT
CTAGCCGTAG CTCAAGCCGA CAAAGTGGTT GAAAAACGTG GCCCAGCTGT GAGTTCAGCA
TTCGATGCAG ACGGCAATCC AACTAAAGCA GCCCAAGGTT GGGCCCGTGG TAATGGCATT
ACTGTCGAGC AAGCTGAGCG CTTAGTAACA GATAAAGGCG AATGGTTAGT ACATCAAGCT
AAAGTGGTGG GTGTTCAGAC TAACAGCCTG ATTGCCGCTA TGGCCCAACG TGCATTAGAC
AAATTACCTA TCCCTAAGCC AATGCGCTGG GGTGCCAATA GCACCCAATT TATTCGTCCA
GTACACACAG TGACTATGCT ATTAGGCAGC GAATTAATTG GCGGTGAACT ATTAGGTATT
AAATCGGACC GTATCATTCG TGGTCACCGC TTTATGGGGC AAGCCAGTTT TCAGCTAGAT
CACGCCGATA ACTATTTAAG CGCCCTAAAA GAGCAAGGCA AGGTACTGGC TGATTACCAG
CTACGTAAAG CTATCATTAA AGCTGATGCT GAAGCGGCAG CGGCTAAGAT AGGCGGTGTG
GCTGATATTC AAGAAGACTT GTTAGAAGAA GTCGCCTCCT TGGTTGAATG GCCAATCGTG
CTCACGGCAA GCTTTGAAGA AAAATTCTTA AATGTGCCTG CTGAAGCCTT GGTGTACACC
ATGAAGGGCG ATCAGAAATA CTTCCCAGTA TTTGATAAGT CAGGCAAATT ACTGCCTAAC
TTTATCTTCG TGACCAACAT TGAATCAAAA GATCCACAGC AGATTATTTC TGGCAATGAG
AAAGTGGTTC GCCCTCGTCT TGCCGATGCC GAATTCTTCT TTAACACAGA TAAAAAGCAC
AGCTTGGCAT CACGCCTTAG CAGCTTAGAA ACTGTGGTAT TCCAAAAACA ACTGGGTACG
CTAAAAGCGC GCGCCGAGCG TATATCACAG CTCGCAGGAT TTATTGCGAC TGAGTTAAAT
AACAATAATC TTGCCAGTAG TAGTGTCGAC GCCGCTCGAG CAGGCTTGTT ATCCAAAGCC
GATTTAATGA CTAATATGGT GATGGAGTTT ACCGATACTC AAGGCACCAT GGGCATGCAT
TATGCGCGCC TAGATGGTGA AACTGAAGCG GTAGCCATTG CCATTGAAGA GCAATATAAA
CCTAAGTTCT CTGGCGATAC TGTGCCAACA GCGAGTGTCT CTTGTGCGGT CGCCTTAGCC
GAAAAACTTG ATACCTTAGT AGGTATTTTT GGTATTGGTC AAGCACCTAA AGGCGCTGCG
GATCCGTTCG CACTTCGCCG CGCCGCCATT GGTATCTTAC GTATTATTGT TGAGAACAAA
CTGCCGCTAG ATTTAGTCGA CCTTATTGCT AAGGCGCAGG CGCTTCACGG CACTAACCTC
ACCAATGGCA ATACCAGTGA AGATGTACTG GAATTTTTAA TGGCACGTTT CCGTAGCTGG
TATCAAGATA AAGGCATTCA AGTGGATGTT ATCTTGGCAG TATTGGCTCG TCGCCCTACG
CGTCCAGCGG ACTTTGACAG CCGCGTTAAT GCGGTATCAC ACTTCCGTGG TTTAGAAGCC
TCTACCGCAC TTGCAGCAGC AAACAAACGC GTGTCTAACA TCTTGGCTAA GGTTGAGGGC
GAATTGCCTG CTAACGTGAC CCCAAGCCTG CTAACCGAAA CTGCAGAGAA AGCCCTAGCC
GAGCAATTAG CAAGCTTGCA ACCTAAGCTA GCGCCTTTGT TTGCAACAGG TGATTATCAG
CAAGCACTGA CATTATTGGC AGAGCTTCGT GAAAGCGTCG ATCAATTCTT CGAAGATGTA
ATGGTAATGG CAGATGATGA AGCCTTAAAG AACAACCGTT TAGCTTTGTT AAACAACTTG
CGTGAGCAGT TCTTGCACGT TGCCGACATT TCATTGTTGC AATAG
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| Protein sequence | MKFENLLIEI GTEELPPKSL RTLADSFLAN FSDELVKADL PFTAATWYAA PRRLALSITG
LAVAQADKVV EKRGPAVSSA FDADGNPTKA AQGWARGNGI TVEQAERLVT DKGEWLVHQA
KVVGVQTNSL IAAMAQRALD KLPIPKPMRW GANSTQFIRP VHTVTMLLGS ELIGGELLGI
KSDRIIRGHR FMGQASFQLD HADNYLSALK EQGKVLADYQ LRKAIIKADA EAAAAKIGGV
ADIQEDLLEE VASLVEWPIV LTASFEEKFL NVPAEALVYT MKGDQKYFPV FDKSGKLLPN
FIFVTNIESK DPQQIISGNE KVVRPRLADA EFFFNTDKKH SLASRLSSLE TVVFQKQLGT
LKARAERISQ LAGFIATELN NNNLASSSVD AARAGLLSKA DLMTNMVMEF TDTQGTMGMH
YARLDGETEA VAIAIEEQYK PKFSGDTVPT ASVSCAVALA EKLDTLVGIF GIGQAPKGAA
DPFALRRAAI GILRIIVENK LPLDLVDLIA KAQALHGTNL TNGNTSEDVL EFLMARFRSW
YQDKGIQVDV ILAVLARRPT RPADFDSRVN AVSHFRGLEA STALAAANKR VSNILAKVEG
ELPANVTPSL LTETAEKALA EQLASLQPKL APLFATGDYQ QALTLLAELR ESVDQFFEDV
MVMADDEALK NNRLALLNNL REQFLHVADI SLLQ
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