Gene Sden_0002 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSden_0002 
Symbol 
ID4017794 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella denitrificans OS217 
KingdomBacteria 
Replicon accessionNC_007954 
Strand
Start bp1418 
End bp2518 
Gene Length1101 bp 
Protein Length366 aa 
Translation table11 
GC content44% 
IMG OID637953972 
ProductDNA polymerase III, beta subunit 
Protein accessionYP_561022 
Protein GI91791371 
COG category[L] Replication, recombination and repair 
COG ID[COG0592] DNA polymerase sliding clamp subunit (PCNA homolog) 
TIGRFAM ID[TIGR00663] DNA polymerase III, beta subunit 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value2.00886e-11 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAATTTT CTATCGATAG GGACGCCCTA TTAAAACCAC TTCAATTGGT TACAGGTGCT 
GTCGAACGTC GTCATAATTT GCCTATTTTA GCTAACTTGC TGGTTAAGGT TAGCCAAGAC
GTAATTAGTC TTACCGGGAC AGATTTAGAA GTTGAGCTCG TGGGTCAAGC CGCTATTCAT
GGGGACATAG TCCCTGGTAA CACCACAGTG CCAGCTAAAA AGTTACTCGA TATCGTCAAA
TCATTACCAG AGCAAAGTGA ACTGCATGTG GAACAGCAAG ATAACCGTTG GTTATTGCGC
TCGGGTCGCA GCCGTTTTAC CTTGGCGACG CTGCCAGCAT CAGATTATCC CAATGTGGAA
GCCTTTCAAG CAGAAATTGA ATTCACCATT AAGCAAGGCG TGCTTAAGTC GATCATAGAT
TCGACCCAGT TTTCCATGGC TAACCAAGAT GTGCGTTATT ACCTCAATGG TTTATTGTTT
GAAACCGAAG GTAACACCTT AAAAGCCATT GCCACAGATG GTCACAGATT GGCATTAAGT
CATAGACAAA TAGACGTCAG CTTACCCGAG AAACAAGTGA TTGTGCCCCG TAAAGGTGTG
GTTGAAATGT CACGTTTATT AGATAGCGAT GATAAAGACA TCAGCATTGC CATTGGCGAG
AGCGCCATTC GTGCCGTTAC CGACACTGCA GTGTTCACCA GTAAGCTAGT GGATGGCCGT
TTTCCTGATT ATCGCCGCGT ATTACCTAAA GGCGGTGATA AAGTGGTGGT CGCCAGTCGT
CAGCAACTTA AACAGGCACT CACTCGCGCC TCTATTTTGT CTAATGAAAA GTTTCGCGGT
GTGCGTATTC AGTTGGAACC AGGCTTATTG CGGATAACGG CTAATAACCC TGAACAAGAA
GAAGCCGAGG AAATCATAGA CGTTGACTAT GATTCGGCAA ATCTTGAGAT TGGTTTTAAC
GTCAGTTACT TGCTAGATGT GCTTAATAAT TTAGCCAGCG AAGATGTGCG TATTACTCTT
ATAGACGGTA ATTCCAGCGC CTTGATAGAA AACCACAAGG AAGAAGATTC CATGTATGTG
GTGATGCCGA TGCGTTTATA A
 
Protein sequence
MKFSIDRDAL LKPLQLVTGA VERRHNLPIL ANLLVKVSQD VISLTGTDLE VELVGQAAIH 
GDIVPGNTTV PAKKLLDIVK SLPEQSELHV EQQDNRWLLR SGRSRFTLAT LPASDYPNVE
AFQAEIEFTI KQGVLKSIID STQFSMANQD VRYYLNGLLF ETEGNTLKAI ATDGHRLALS
HRQIDVSLPE KQVIVPRKGV VEMSRLLDSD DKDISIAIGE SAIRAVTDTA VFTSKLVDGR
FPDYRRVLPK GGDKVVVASR QQLKQALTRA SILSNEKFRG VRIQLEPGLL RITANNPEQE
EAEEIIDVDY DSANLEIGFN VSYLLDVLNN LASEDVRITL IDGNSSALIE NHKEEDSMYV
VMPMRL