| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0439 |
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| Symbol | |
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| ID | 4009072 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | - |
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| Start bp | 2887172 |
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| End bp | 2889058 |
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| Gene Length | 1887 bp |
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| Protein Length | 628 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637952238 |
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| Product | TRAP dicarboxylate transporter, fused DctM (12TM) and DctQ (4TM) subunits |
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| Protein accession | YP_554858 |
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| Protein GI | 91779650 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGAATC ACGCATTGAA TCCGGCGGAC GCGGGCGTGC CGCTGCACGC GGCGAGCACG
CCGCGCCGCT GGTTGAGGAG TTTCGATCGC GGTCTGATTG CGCTCGTCGA AGTGTGCGCG
GCGGCGCTGC TCGCGGTGGA GATCGTCGTG ATGCTCGCGG GCGTGATGTG CCGCTACGTG
CTGCATCAAC CGCTCGTGTG GTCCGATGAA CTGGCGGGCA TTCTGTTCCT GTGGCTCGCC
ATGCTCGGCG CCGTGCTCGC GTTGCGGCGC GGCGAACATA TGCGGATGAC GGCACTGGTC
AGCCGCCTGT CGCCGCAGCG GCGCGCGTTC GTCGATACGC TGGCGATCGC CGCGTCGATC
GCATTGCTTG CGCTGTTGAT CGCTCCCGCC TACGACTATG CGTCCGGCGA GGCGGCGATC
GTGACGCCCG CCCTGCAGAT CAGCAATGCG TGGCGCGCGC TCGCTTTGCC GATCGGCGCA
GCGCTCATGC TGCTGGTCGG TCTGATTCGC CTCGCCCAGG TGAGCCGTGT GCGCGACGTC
GTAATCGTGC TCGCGATCAC GGCCGTACTG GCCGCGATAG CCATGTTCGC CGGGCCGTGG
TTTCAGACGC TCGGCAAAAC CAATCTCGTG ATCTTTTTCG TGGGCGTGGT GGCGATCGGG
ATCTTTTCGG GCGTGCCTAT CGGCTTTTCG TTTGCGCTCG CCACGTTCGG TTATCTGGGC
CTCTCGACCT TCACGCCGCT CGAAGTCGTG GTCGGCCGCA TGGACGAGGG CATGTCGCAT
CTCGTGCTGC TCGCTGTGCC GCTGTTCGTC TTTCTCGGCT TGCTGATCGA GATGACCGGC
ATGGCGCGCG CGATGATCGA GTTTCTCGCG AGCCTCGTCG GCCATGTGCA TGGCGGACTG
TCATTCGTGC TGATCGGCGC GATGTATCTG GTGTCGGGCA TTTCCGGTTC GAAAGTGGCG
GACATGGCGG CGATCGCGCC CGTGCTGTTC CCGGAGATGA AAAAACGCGG CGCTTCCGAA
GGCGATCTGG TCGCGCTGCT CGCCACGACC GGCGCGCAAA GCGAAACCAT TCCGCCGAGC
ATTGTGCTGA TCACGATCGG TTCGGTCACG GGTCTGTCGA TCTCCGCGCT CTTCACCGCG
GGCATGCTGC CAGGCGCGGT GCTCGCGCTG ATTCTGTGCG CGGTGGTGTG GTGGCGCTAT
CGCAAGGAAG ACCTGAGCGG CGCGCAGCGT TTCAGCAAGC GGCAGATCGG GCGTCTGTTC
ATCGTGTCGC TGCCCGCGCT GGCGTTGCCG TTTGTGATTC GCATGGCAGT GGTCGAAGGC
GTGGCGACGG CAACCGAGGT GTCGACCATC GGCATTGCCT ATTCGATGCT GATCGGCCTG
CTGGTGTACC GCCGCTTCGA ATGGCGGCGG CTGGGCCGCA TGCTGGTGGA TGCGGCCACG
TTGTCGGGCG CGATCCTCTT CATCATCGGC TGTGCGACTG CAATGGCGTG GGCGCTGACG
CAATCCGGCT TTTCGCAGGA TCTTGCGCAA GTCATGGGCT CGATGCCCGG CGGCGCGTAC
GGTTTTCTGG CGGTTTCGAT TGTCGTGTTC GTGATGCTCG GCAGCGTGCT CGAAGGCATT
CCCGCGATCG TGCTGTTCGG GCCGCTGCTG TTTCCTATCG CGCGGCTCGC GGGCGTGCAC
GAAGTGCATT ACGCGATCGT CGTGATTCTC TCGATGGGCG TGGGGCTCTT TTCGCCGCCG
TTCGGCGTGG GCTACTACTC GGCGTGCGCG ATCAGCAAGG TCAATCCCGA CGCGGGCATT
CGTCCGATTG TCGGCTATAT GGGCGCATTG CTCGTCGGCC TGATTCTGGT CGCGGCGATC
CCCTGGATTT CGATCGGGTT TCTCTAA
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| Protein sequence | MSNHALNPAD AGVPLHAAST PRRWLRSFDR GLIALVEVCA AALLAVEIVV MLAGVMCRYV
LHQPLVWSDE LAGILFLWLA MLGAVLALRR GEHMRMTALV SRLSPQRRAF VDTLAIAASI
ALLALLIAPA YDYASGEAAI VTPALQISNA WRALALPIGA ALMLLVGLIR LAQVSRVRDV
VIVLAITAVL AAIAMFAGPW FQTLGKTNLV IFFVGVVAIG IFSGVPIGFS FALATFGYLG
LSTFTPLEVV VGRMDEGMSH LVLLAVPLFV FLGLLIEMTG MARAMIEFLA SLVGHVHGGL
SFVLIGAMYL VSGISGSKVA DMAAIAPVLF PEMKKRGASE GDLVALLATT GAQSETIPPS
IVLITIGSVT GLSISALFTA GMLPGAVLAL ILCAVVWWRY RKEDLSGAQR FSKRQIGRLF
IVSLPALALP FVIRMAVVEG VATATEVSTI GIAYSMLIGL LVYRRFEWRR LGRMLVDAAT
LSGAILFIIG CATAMAWALT QSGFSQDLAQ VMGSMPGGAY GFLAVSIVVF VMLGSVLEGI
PAIVLFGPLL FPIARLAGVH EVHYAIVVIL SMGVGLFSPP FGVGYYSACA ISKVNPDAGI
RPIVGYMGAL LVGLILVAAI PWISIGFL
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