| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_B0188 |
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| Symbol | |
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| ID | 4009323 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007952 |
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| Strand | - |
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| Start bp | 3157199 |
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| End bp | 3160642 |
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| Gene Length | 3444 bp |
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| Protein Length | 1147 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637952485 |
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| Product | YD repeat-containing protein |
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| Protein accession | YP_555105 |
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| Protein GI | 91779897 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.336651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTCT TTGATGCCCT GGTGGCGCGT CGTGCGCTGC GGCGTCCGTT CGTTCTGTTG
CTGTTCTTCA TGTTGCTGTC GTGGTTCGTG GTGCCGCATG CGCATGCCAA CGACTATTGC
AACAGCCGAT ACATTGCCGC CGGTGCTTAT CCCGCCGATC CGCAATGTCC GCTGAAGGCG
GCGGCCGCAG ACTTCGGCGG CATGGGCGGA TACGTGTGTG GCGATCCAAA CGTGATCGCG
GAATATTGCA GCGGCCCGGC GGGGACCGAC ACCACCGAAC CAGCGTCGCC TGAAGGCAGC
ATGCCCGACG TGGGAGGGAA CGACTGTTCG AGCGACGCCA CGGCCGGTTG CGGCAACAGC
ACCTCGGGCG CCGATCCGGT GAACCTGTAC ACAGGCCAGT TCTACCAGTA CGCGCATGAC
CTGTCGGTTG CAGATACAGC CGGAAGCTTC GATCTCACGC GGGTCTACCG TAGCGGCGCT
TACGATGCGT CGGGCAATCC GTTGACCGGT GCCTTTGGCG TCGGGATGAG TTTTACCTAC
GACACGATCC TTGCCATGAG CACTGATCGT CAGCGGTTCG AGTTGCGCGA GGCGTCAGGC
ATTCGCGTGC CGTTCACGCC GCGCGCGGGT AGCAGCAAGA TCTGGGACGA CCTGACAAGC
CCGGGAGAAT ACTACCGCGC GCGGATCGAT GCCGTCGGCA GTTCGGGCAT GACGCTGACG
TTGCGCGATG GGCGGACTCA GCAGTTCACG ATGATTGCCG GCGTCTATCG TCTGGTCCGG
TTGCAGGACC GCAATGGCAA CGCTGTCGTG ATCGCACGCG ACAGCAAAAC GGGCGCGGTC
ATGACCGTCA GCAGCCCGAA CGGCCGATTG CTCGATTTCA CTTCGGTCAC TGGCAGCCGC
GGCACGCCGC TGGTTTCGCG CGTCAGCGAT CCGCTCAAAC GTCAAGTGAA CTACCAGTAC
GACGGTCAGG ACCGGCTGAT CCAGTTCACG GACGCGGGCG GTGGTGTATG GCGATACGGC
TGGGACAACC AGAGCCGTCT TGTCACTGTC ACCGATCCTC TGGGCAACGT TCAGGTGAAC
AATACTTACG GGAATGGGCG CGACCTGAAG GACCGCGTTG TTTCGCAGAA ACTCGCTGAC
AACAGTACGT TCGGCTTCGC ATACACGGTG GTCAACGGCA AGGTTGTGCA GACCGAAGTG
ACGGACCGCC GCGGCAGTGT TCGCCGGCTG GAATTCGATG CGAGCGGCCA CGTCGTGCGC
AATACCTATC CAGCCGGGCT CGACATTGTC CAGGTCCAGA CCTATGCGTA TGACGCCACC
GGTCGGGTGA CGAACCGCAC ATGGGCGGAT CGCCAGTACA GCTACGCCTA TGACACGAAT
GGCAACCGCA TCGGCGAGGC CGATCAATAC GGCACGCTGG TTACGCGTAG CTTCGACAGT
TACAGTCGGC TGCTCACGGA GGCACAGGCC GGCGACCCGC AGCGCGGCGT GAGCACGATC
TACGCGTACG ACGCGAAAGG CAATCTCCTG ACGGTCACGG ACCGGCTCGG TAACCGTACG
ACGCTGACGA ACGATAGCCG TGGGCGCCCT CTCACGGTGA CCGATGCCCT GAAGGGCTTG
ACGAAATATG TCTGGACCGG CGCTGATCTG ACCAGTGTCA CGGATCCGCT AAACCGTACT
ACCCAATTCA CGACTGATGC CGCCGGCCGG TTGACGGCGG TACAGGATCC GCTCGGCAAT
AGGACGTGGC GCACGCTCGA TGCACTGGAC CGGACTACGG ATGTCACCGA CGCCGCAGGC
GGGGTGAGCC ACTTTACATG GGACAGTGGC GCTCACCTGC TCAGTCAGGT CGATCCAAAG
GGTGTCACGA CGCGCTACAC GTACGACGCG ATTGGCCGCC CGCGGACTAA AACCGATCCG
TTGGGGCACA GTGAAACGTA TACGTGGAAC AGCGCCGGAC AGATCGAGTC GTTAACTGAC
CGTAAAGGTC AGGTGACGAG CTACACCTAC GATGCCGCTG GCCGCGCTTT GCAGACGGAC
TTCCGGACGG AGCCTGGCGC GTTGCCGGTT CGAAGCTGGG CGTATGGCTG GAACGATGCA
CTCGACAAGC TGAACGGCAC GCGCGACTTC ATTCCTACCG CGGACGGGCG GCACCAGAAG
GAAGTCGATA CGGTATTCCA CTACGACAGC CTTACCGGCA AGCTGGTCCG CGCATTGGAG
ATCCCGACGT TTCAAGGAAT CTGGACGTAT CGCTACGCGC CCGACACCCG TGATCTGGCC
GGCATCGATA TGGATCGCGC AACGGTGAAC TACAGCCGTG ACGCGGAACA TCGGGTGACC
CAGATCCAGT ATGAGGTAAA TGATGAAGCG CCACGCACGT TCAATTACGC GTACGACCCG
CTGGGGCGGC CCGGTCAGGT CACGTTTGCC AATGGCATCG TGGCAACCTA TACGTGGGAC
GCCGCGAGCC AGTTAACGGG CATCACCTAC AGGCGTGCTG ACGGAAACGT ACTGGGCGAC
CTGACATATG GCTACGACCT TGCAGGCCGG CGTACCAGAG CAGGTGGCAG TCTTGCGAAG
GTCAACCTGC CGCAGGCGGT GAGTGACGCG CAGTACAACG GCGCGAATCA GTTGACGCGC
TGGGCGGGGA AGACACTGTC GTACGACCTG AACGGCAATC TCGCTAGCGA TGGTGTGAAT
CAATTTGGCT GGAACGAGCA GAATCTGCTG AGGCAGATCA GCGGCGGCGT GACGGCCAGC
TTCAGTTACG ACATGTTCGG CCGGCGCAAC GATCGCACGG TCGATGGCCA CCGCATGCAG
ACGGCCTGGA TTGGCGATGA ACTGAACTTC ATGGTGCAGG ATGGTGACTG GTCACAGCGT
ATTCGCATGT TCTCGCCTTA TCAGGCAGGC GGCCCGGACG AGCTGACGTT CCGGCGTATT
GGTGACGACG CGAGCCTGGA CAGGTATGTG CTGCGCGATG CGAATAATAA TGTGATCGCG
CTCACGGATG CGGATCAGCA AAGTCAGACG CAGTACAGCT ATGAGCCATA CGGCGCGACT
GTTCAGACAG GTGTTGCCGA TCCCAACCCG CAGCAGTACA CCGGGCGGGA GAATGATGGG
ACGGGGTTGT ATTACTATCG GAACCGGTAT TACAGTCCGG CGACCGCACG GTTCATTAGT
GAAGACCCCC TAGGCTGGGC GAGTGGGCAG ACGAATGCGT ATGCTTATGT GGGTGGGAAT
CCGGTTCAGT TCACGGATCC GTTTGGGCTT GGACCATGGG ACCAGAAGTA TGGCTTGTCG
AATACTTATT GGAATTGGCT CCACCGGCAA GATGGCGGTT CGTTGATCAA AGAGCTTAAA
GACCCACGGA CCGGGCAGGT CCCGAAAGAC ACTGCGTTGG AGTACTACAA GATATATCTT
TTTGAGACCG GGCAATGCGG GTGA
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| Protein sequence | MQVFDALVAR RALRRPFVLL LFFMLLSWFV VPHAHANDYC NSRYIAAGAY PADPQCPLKA
AAADFGGMGG YVCGDPNVIA EYCSGPAGTD TTEPASPEGS MPDVGGNDCS SDATAGCGNS
TSGADPVNLY TGQFYQYAHD LSVADTAGSF DLTRVYRSGA YDASGNPLTG AFGVGMSFTY
DTILAMSTDR QRFELREASG IRVPFTPRAG SSKIWDDLTS PGEYYRARID AVGSSGMTLT
LRDGRTQQFT MIAGVYRLVR LQDRNGNAVV IARDSKTGAV MTVSSPNGRL LDFTSVTGSR
GTPLVSRVSD PLKRQVNYQY DGQDRLIQFT DAGGGVWRYG WDNQSRLVTV TDPLGNVQVN
NTYGNGRDLK DRVVSQKLAD NSTFGFAYTV VNGKVVQTEV TDRRGSVRRL EFDASGHVVR
NTYPAGLDIV QVQTYAYDAT GRVTNRTWAD RQYSYAYDTN GNRIGEADQY GTLVTRSFDS
YSRLLTEAQA GDPQRGVSTI YAYDAKGNLL TVTDRLGNRT TLTNDSRGRP LTVTDALKGL
TKYVWTGADL TSVTDPLNRT TQFTTDAAGR LTAVQDPLGN RTWRTLDALD RTTDVTDAAG
GVSHFTWDSG AHLLSQVDPK GVTTRYTYDA IGRPRTKTDP LGHSETYTWN SAGQIESLTD
RKGQVTSYTY DAAGRALQTD FRTEPGALPV RSWAYGWNDA LDKLNGTRDF IPTADGRHQK
EVDTVFHYDS LTGKLVRALE IPTFQGIWTY RYAPDTRDLA GIDMDRATVN YSRDAEHRVT
QIQYEVNDEA PRTFNYAYDP LGRPGQVTFA NGIVATYTWD AASQLTGITY RRADGNVLGD
LTYGYDLAGR RTRAGGSLAK VNLPQAVSDA QYNGANQLTR WAGKTLSYDL NGNLASDGVN
QFGWNEQNLL RQISGGVTAS FSYDMFGRRN DRTVDGHRMQ TAWIGDELNF MVQDGDWSQR
IRMFSPYQAG GPDELTFRRI GDDASLDRYV LRDANNNVIA LTDADQQSQT QYSYEPYGAT
VQTGVADPNP QQYTGRENDG TGLYYYRNRY YSPATARFIS EDPLGWASGQ TNAYAYVGGN
PVQFTDPFGL GPWDQKYGLS NTYWNWLHRQ DGGSLIKELK DPRTGQVPKD TALEYYKIYL
FETGQCG
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