| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A4122 |
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| Symbol | |
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| ID | 4003440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia xenovorans LB400 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007951 |
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| Strand | - |
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| Start bp | 374061 |
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| End bp | 375578 |
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| Gene Length | 1518 bp |
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| Protein Length | 505 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637945530 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_556930 |
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| Protein GI | 91781724 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCA GCCTCCAACT CCGCCTATCG CAGCATCTTG CGCTGACGCC GCAACTGCAG
CAGTCCATCC GGCTGCTTCA GTTGTCCACG CTCGAATTGC AGCAGGAAGT CGCAATGGCG
ATCTCGCAGA ATCCGCTCCT CGAGAACGAG GACGACTGGA TCGCGAGCCC GCTGCGCGTG
GCGGCCGACG GCTCGCTGAT CGCCCAGGCG CCGAATTCCT CCGCTCCGCC CGACCAGATG
GGCGGCAGCA CGTCGTCATC GTCCACCAGC AGCAGCGAGC GCGCCGAGAA CGGCGAGCCG
CAGGGCGTGG ACGAATACAA CGGCCTCGCG GGCGACAGTA ACGGCGACGC GTCGCAATGG
AATCTCGACG ACTACGGCCG CTCGGGCAAC GCCTCGGACG ACGACGACCT GCCGCCGCTG
CAAATCCACG AATCGAGCAC CTCGCTGCGC GATCACCTGA TGGCGCAATT GCGCGTCACC
CAGGCGAGTC CGCGCGACCG CGCGCTGGTC ACGTTCCTGA TCGAGTCGCT CGACGACGAC
GGCTACCTTG CCGCCACGCT CGAAGAAGTG CTGGCGGATC TGCCCGAAGA GCTCGAAGTC
GACCTCGACG AGCTGAATGC CGCGCTTGCG CTGCTGCATA GCTTCGACCC GGCCGGGGTC
GGCGCGCGCT CCGCGTCGGA ATGTCTCAAG CTGCAATTGC TGCGACTCGA TGCCTCACCT
ACCCGCACGC TTGCGCTCGA AATCGTAGCG CACCACCTGG AATTGCTCGC GGCGCGCGAC
TTCACGCGCC TGCGCAAACA TCTGAAAGCC AGCGACGACG ACCTGCGCGA TGCACACGTG
CTGATCCGCT CGCTCGAACC GTTCCCCGGC GCCGCCTACG GCAAGGCCGA AGCGGACTAT
GTCGTGCCGG ACATCATGGT GCGTAAAACA GCACAGGGCT GGCAGGCCGA GCTGAACCCG
GAAGTCGTGC CCAAGCTGCG TATCAACCAT CTTTACGCGA ATATCCTGCG CAATAACCGG
GGCGATCCGG GCAGCGGTTC GTTGCGCCAG CAACTGCAGG AAGCGCGCTG GCTGATCAAA
AATATCCAGC AGCGTTTCGA GACGATCCTC CGGGTGGCGC AAGCCATTGT GGAGCGTCAA
AAGAGCTTTT TTGTGCATGG CGAAATTGCC ATGCGCCCCT TGGTTTTGCG GGAAATTGCT
GATACGCTGG GCCTACACGA GTCAACTGTC TCGCGTGTGA CAACCGGCAA ATACATGCTG
ACCCCATTCG GGACGCTTGA ATTTAAGTAC TTCTTCGGAT CACACGTTTC GACTGACACG
GGCGGCGCGG CGTCTTCAAC GGCGATCCGT GCGCTCATCA AGCAACTGAT AGGAGCGGAA
AACCCGAAAT CTCCTCTTTC AGACAGCCGC ATAGCCGAAC TGCTGGCGGA ACAGGGCTTC
GTGGTCGCAC GGCGTACCGT CGCGAAATAT CGTGAAGCGC TCAAGATTCC GGCAGTCAAC
CTGCGCAAGT CGTTATAG
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| Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA ISQNPLLENE DDWIASPLRV
AADGSLIAQA PNSSAPPDQM GGSTSSSSTS SSERAENGEP QGVDEYNGLA GDSNGDASQW
NLDDYGRSGN ASDDDDLPPL QIHESSTSLR DHLMAQLRVT QASPRDRALV TFLIESLDDD
GYLAATLEEV LADLPEELEV DLDELNAALA LLHSFDPAGV GARSASECLK LQLLRLDASP
TRTLALEIVA HHLELLAARD FTRLRKHLKA SDDDLRDAHV LIRSLEPFPG AAYGKAEADY
VVPDIMVRKT AQGWQAELNP EVVPKLRINH LYANILRNNR GDPGSGSLRQ QLQEARWLIK
NIQQRFETIL RVAQAIVERQ KSFFVHGEIA MRPLVLREIA DTLGLHESTV SRVTTGKYML
TPFGTLEFKY FFGSHVSTDT GGAASSTAIR ALIKQLIGAE NPKSPLSDSR IAELLAEQGF
VVARRTVAKY REALKIPAVN LRKSL
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