| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bxe_A3136 |
|---|
| Symbol | |
|---|
| ID | 4002703 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia xenovorans LB400 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007951 |
|---|
| Strand | - |
|---|
| Start bp | 1468071 |
|---|
| End bp | 1469633 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637946504 |
|---|
| Product | fumarase |
|---|
| Protein accession | YP_557895 |
|---|
| Protein GI | 91782689 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.119324 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0284437 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCCGACA ACAAGCGCCC CGTCTCCACT GAGCTAGCCA TGACCGTCAT CAAACAGGAA
GATCTGATTC AGAGCATTGC TGATTCGCTT CAGTACATCA GCTATTACCA TCCGCTCGAC
TACATCCAGG CCTTGGGCCG CGCGTACGAA CTCGAACAGA GCCCGGCCGC GAAAGACGCC
ATCGCGCAGA TTCTCACCAA CAGCCGCATG TGCGCCGAAG GCAAGCGCCC GATCTGCCAG
GATACCGGCA TCGTCACGGT GTTCGTGAAA GTCGGCATGG ACGTGCGTTG GGACGGCGCG
ACGATGGGTG TCACCGACAT GATCAACGAA GGTGTGCGCC GCGGTTATCT GAACCCGGAC
AACGTGCTGC GCGCGTCGAT CGTGAGCCCG CCCGAAGGCG GCCGCAAGAA CACGAAGGAC
AACACGCCGG CCGTGATCCA CTACGAGATC GTGCCGGGCA ATACGGTCGA CGTGCAGGTC
GCGGCCAAGG GCGGCGGCTC GGAAAACAAG TCGAAGTTCG CGATGCTGAA CCCGTCGGAT
TCGATCGTCG ACTGGATCCT GAAGACCGTG CCGACCATGG GCGCGGGCTG GTGCCCGCCG
GGCATGCTCG GCATCGGCAT TGGCGGCACC GCCGAGAAAG CGATGGTGAT GGCGAAGGAA
TCGCTGATGG ATCCGATCGA CATTCAGGAC GTGATCGCGC GCGGCCCGAA GGACTGGATC
GAAGAACTGC GCGTGGAACT GCACGAGAAG GTCAACGCGC TCGGGATCGG CGCGCAGGGT
CTCGGCGGTC TCGCCACCGT GCTCGACGTG AAGATCATGG CCGCGCCGAC TCACGCCGCG
TCCAAGCCGG TTGCGATCAT CCCGAACTGC GCGGCCACGC GCCACGCGCA CTTCACGCTG
GACGGCTCGG GCGCCGCCAG ACTCGAGGCG CCTTCGCTCG ACGCATGGCC GAAGGTGCAT
TGGCAGCCGG ACACGGAGAA GAGCAAGCGG GTCGATCTGA ACACGCTCAC GCCGGAAGAA
GTCGCGGCGT GGACGCCGGG CCAGACGCTG CTGCTGTCGG GCAAGATGCT GACGGGCCGC
GACGCCGCTC ACAAGCGCAT TGCCGACATG CTGGCAAAGG GCGAAAAGCT GCCGGTCGAC
TTCACGAACC GCGTGATCTA CTACGTCGGC CCGGTCGATC CGGTGCGCGA TGAAGCCGTC
GGTCCCGCAG GCCCGACCAC GGCAACCCGC ATGGACAAGT TCACCGAGAT GATGCTGGCG
CAAACCGGCC TGATTTCGAT GATCGGCAAA GCCGAGCGCG GCCCTGTCGC GATCGAGGCG
ATCAGGAAGC ACAAGGCCGC TTATCTGATG GCCGTGGGCG GCGCGGCGTA TCTCGTGTCG
AAGGCGATTC GCAGCGCCAA GGTTCTCGCA TTCGAAGACC TCGGCATGGA AGCGATCTAC
GAGTTCGACG TGCAGGACAT GCCGGTCACC GTGGCCGTCG ATTCGAACGG CACCTCCGTT
CACCAGACCG GCCCGAAGGA ATGGCAGGCC AGAATCGGCA AGATTCCGGT CGCGACCGTT
TGA
|
|---|
| Protein sequence | MSDNKRPVST ELAMTVIKQE DLIQSIADSL QYISYYHPLD YIQALGRAYE LEQSPAAKDA
IAQILTNSRM CAEGKRPICQ DTGIVTVFVK VGMDVRWDGA TMGVTDMINE GVRRGYLNPD
NVLRASIVSP PEGGRKNTKD NTPAVIHYEI VPGNTVDVQV AAKGGGSENK SKFAMLNPSD
SIVDWILKTV PTMGAGWCPP GMLGIGIGGT AEKAMVMAKE SLMDPIDIQD VIARGPKDWI
EELRVELHEK VNALGIGAQG LGGLATVLDV KIMAAPTHAA SKPVAIIPNC AATRHAHFTL
DGSGAARLEA PSLDAWPKVH WQPDTEKSKR VDLNTLTPEE VAAWTPGQTL LLSGKMLTGR
DAAHKRIADM LAKGEKLPVD FTNRVIYYVG PVDPVRDEAV GPAGPTTATR MDKFTEMMLA
QTGLISMIGK AERGPVAIEA IRKHKAAYLM AVGGAAYLVS KAIRSAKVLA FEDLGMEAIY
EFDVQDMPVT VAVDSNGTSV HQTGPKEWQA RIGKIPVATV
|
|---|
| |